Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1764 atgttcctAGTCTTTCTTGTTGCAAACGAAAGCACATTATTCCGTTtctattttcttgtttctttctaTCTTTACTTGGAGGCAGAATTGGAAATCAGAAAGGCTCTCTTCGAAACTGTGTGGACGATGGCGAAGTTGAAGATAGGAGGGACATGGGCCGGGGTGCTTGAAGAGGTGGACCTCGAGGGTTGGACCCTGGCGACTCTCCGCGAGCACGTGGCCACCCGATCCAACTCTGCCCCTCACTCCATCAACCTCATCTGCACCGGCAAGATTCTCAGAGACGACACCGTTCCGCCCCAAACCCTCTCCCAACTCGGCATCAGAAACAACTCCAAGATCCTCGCCACGCGCGCCTCCTCACCCCAGCAGGGCCTCTCCCTCCTCGCCCAGGAAGAACGCTCCCGCAGACTCGCGCGTATCAGGGCGGCTGCGACTGCGATGGCGGAACGGCACGCGGAAGGTGCGTTGCCGGTTGAGGACTTCAACATTGAAGTTGAGGATCAGAGTGGACAGAAAGTGCGTTTAGGGTCAGAGACTGATCAGAGGGCAGTGATGATGGGACTGATGCTTCACGCGAAGGGGAAGCGGCTTATCAGACAGGAGAATTACAAAGATGCGCTGGAAGTGCTTAGCATGGGAGAGGAGGCATTCTCTCTCTGTGATCCAAAAGTCATTGAGCTCATCGACAATGTTCCAATACTACAAATAGACATGGTCTGGTGCTATTTTATGATACGAGACATCAGATGGCTCTCAGATGCAGGAAAGCGTCTTGACATGGCTAGGGCAGGAATTGAACGTGCTCATGGAAAGGATTCTTTTCGCCTCAGACTCTTACAAGGAGCTCGCTATCCAGAACTTGCATTGCATTTGAGACTAGAGCTGCTTGAAGGGGTGGTCGCATATCATACTGGCCAGTTGGAGAAATCAAGAAAAGCATTAGGCTCTGCAAGAGCAAAGTTTGTCCAGcTGCAAGTGCCAGATGAAGCCTTATCACTTGTTATGAGCATGGGCTTTGTTGAACGTGATGCAAAGAGAGCATTGCGAATGAACAATCAAGATGTTGGGAGTGCCATTGATTTCCTTGATGATGAGAAAGCTAAGAAATTGCAAAAAAGGGAGGAGGATATTCGGAGAAGAAATGAAATTAAGGATCAAAAGCGGTATGGGATGACACCCTTAAAGAAAGCTGTGGATCTAGAGAGATTGAAGGAATTGGTCTCTATTggGTTTGACAAGGAGCTTGCTGCTGAAGCCcttagaaaaaatgaaaatgatactCAGAAAGCATTGGATGATTTGACGAATCCAGAAACTAATTCTGCTTTACAGGTTGATATCGAGGCAAGGAAAAGGAAGAGACAGAAACAAGCAAAAGATTCTGCAATTGAAAAAGTTGTGCAAATGGGTTTCAAAAGATCAAGAGTGGTTGCTGCTTTTGAGGCCGGGGGTACTTTAGAACAAGTATTGCTAAGACTGACAGCACAATCTGAGACTGACCCCACATCAGCTGCCGCAAATATGCAACCTCAAGAAAACTCAACTGCTGCTCCCCATGGTGGTGCAAGTTCATCTGCTCCTTTACCAGACAATGTTAATTCTGATATTCTAGACATGATGAATGAGGTTGAAGATTCATCTGATCACATTAAAACAGAAGAACGGGATGTAGAGATGGAAGACGAGCTCTCTGCAGATATTGTGAAAGCAGATGCCTTGGCTGATTATGACATTGAAGTTAATGTAGAAGGGGAAGCCATAACCGAGTACCTGGCCCTGGTTGAGTCAGCAGGCAGTTATGGGGAAACGGTTCCTTCCcagtaa 1827 0.4641 MFLVFLVANESTLFRFYFLVSFYLYLEAELEIRKALFETVWTMAKLKIGGTWAGVLEEVDLEGWTLATLREHVATRSNSAPHSINLICTGKILRDDTVPPQTLSQLGIRNNSKILATRASSPQQGLSLLAQEERSRRLARIRAAATAMAERHAEGALPVEDFNIEVEDQSGQKVRLGSETDQRAVMMGLMLHAKGKRLIRQENYKDALEVLSMGEEAFSLCDPKVIELIDNVPILQIDMVWCYFMIRDIRWLSDAGKRLDMARAGIERAHGKDSFRLRLLQGARYPELALHLRLELLEGVVAYHTGQLEKSRKALGSARAKFVQLQVPDEALSLVMSMGFVERDAKRALRMNNQDVGSAIDFLDDEKAKKLQKREEDIRRRNEIKDQKRYGMTPLKKAVDLERLKELVSIGFDKELAAEALRKNENDTQKALDDLTNPETNSALQVDIEARKRKRQKQAKDSAIEKVVQMGFKRSRVVAAFEAGGTLEQVLLRLTAQSETDPTSAAANMQPQENSTAAPHGGASSSAPLPDNVNSDILDMMNEVEDSSDHIKTEERDVEMEDELSADIVKADALADYDIEVNVEGEAITEYLALVESAGSYGETVPSQ 608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1764 608 ProSiteProfiles Ubiquitin domain profile. 65 114 IPR000626 GO:0005515
Ssu1g1764 608 MobiDBLite consensus disorder prediction 498 563 - -
Ssu1g1764 608 PANTHER NEDD8 ULTIMATE BUSTER-1 BS4 PROTEIN 63 598 IPR039749 -
Ssu1g1764 608 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 398 438 IPR015940 -
Ssu1g1764 608 SMART uba_6 400 437 IPR015940 -
Ssu1g1764 608 SMART uba_6 328 365 IPR015940 -
Ssu1g1764 608 SMART uba_6 460 496 IPR015940 -
Ssu1g1764 608 SUPERFAMILY UBA-like 388 437 IPR009060 GO:0005515
Ssu1g1764 608 MobiDBLite consensus disorder prediction 498 532 - -
Ssu1g1764 608 Gene3D - 57 124 - -
Ssu1g1764 608 SUPERFAMILY UBA-like 321 366 IPR009060 GO:0005515
Ssu1g1764 608 Gene3D - 328 366 - -
Ssu1g1764 608 Gene3D - 401 438 - -
Ssu1g1764 608 MobiDBLite consensus disorder prediction 543 563 - -
Ssu1g1764 608 SUPERFAMILY Ubiquitin-like 63 117 IPR029071 -
Ssu1g1764 608 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 326 366 IPR015940 -
Ssu1g1764 608 CDD UBA 404 433 - -
Ssu1g1764 608 Coils Coil 368 388 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1764 Ssu-Chr1 43831862 43836477 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1764 - - gmx:100804062 893.649