Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1747 ATGCCATCCCTAAAAATGAAGGGCAAAGTAAGCGTGAGCTGTTTAACAGAAAGAAAGGAACTTCATGTGTGTCcgaaatcaaaaataatttccaaaaatccATGTTCTAAAATCATGATTTCTACTCAAAAGGCTGAAATAGACACTACTGTTCAAAATTGCCTAGATGTTTCCTCAAGGATGCAGCCCAAAGATGTTGCATGTGATCAATCTATTGACAACAAAGAATTTCTGGATAAAGCAAACTCTGAATCTGAGGACCAATTTTCTGCTTGTTCACCTGTCCTGGAAAAAATGGAACTAACCAACCCCTGTACAGCAAACTTAGAAACGATTTTTTCTCCTGCTTTTGAGCCCATTGAAGTCCATTCACAactttatattgaaaaagatgCAGGGAGCATTGTTGATACAAACATGACAGGAGTGGGAGTTGATGAGGGAAGAGGCATATGTAGTTATGAAACATGTGATGTATCAGACTTCTACATTTCTGACATGATCATTACAAGCTTACCCTTTGGTGGAAATTCCTTTGATGATGATATCAGCGAAACCAACTGCCTATCTGATTATGGATCTGCTGAGCCATCCATGTTTACTGCATCTGAACAGTACATGATCCTGCCTGCTCTTGAAGATGATATTAAAGTTGGCAATACTTCTGATTTCATATCATATGAAGAAGCCGTGATGGTTCGAGAAAGTGCTAGTTTGTATTCAGCAATGGGTCAGATAAGATCCTGCAACCAGGAGTCTGATGTTAAAAGTGACTTGGATAAGTCAGAGTGCTTTGATCCACAGTCATTTATCAAGAATTTACCGGAACTATCAGAAATAGAAGTAAATGGGCAGCCGACCCTAATTCCTAAGCAATCTCCAAGAAGAAAGTCAATTACACTAGTGCTTGATTTAGATGAGACACTTGTTCATTCTACACTGGAACAGTGTGATGATGCAGATTTCACTTTTACTGTTTTCTTCAATATGAAAGAGTACACAGTATATGTAAAACAGAGGCCTTATCTCCACACATTCTTGGAGAGAGTATCAGAGATGTTCGAAGTAGTTATTTTTACTGCCAGCCAAAGCATATATGCAAAGCAACTACTTGACATATTGGATCCTGATGGAAGATTTATTTCTTGCCGTATGTATAGAGAATCGTGCCTTTTCTCAGATGGAAATTACACAAAAGATCTTACTATATTAGGTGTTGATCTTGCAAAAGTTGCCATAATTGATAATTCACCTCAGGTTTTCCGGTTGCAAGTGAATAATGGTATTCCTATAAAGAGTTGGTTTGATGATCCATTAGATTGTGCACTGATGTCATTACTTCCCTTTCTAGAGACCTTGGCTGATGTTGATGATGTCCGTCCTATCATTGCAAAGAGATATGGTAACAAAGAATAA 1416 0.3701 MPSLKMKGKVSVSCLTERKELHVCPKSKIISKNPCSKIMISTQKAEIDTTVQNCLDVSSRMQPKDVACDQSIDNKEFLDKANSESEDQFSACSPVLEKMELTNPCTANLETIFSPAFEPIEVHSQLYIEKDAGSIVDTNMTGVGVDEGRGICSYETCDVSDFYISDMIITSLPFGGNSFDDDISETNCLSDYGSAEPSMFTASEQYMILPALEDDIKVGNTSDFISYEEAVMVRESASLYSAMGQIRSCNQESDVKSDLDKSECFDPQSFIKNLPELSEIEVNGQPTLIPKQSPRRKSITLVLDLDETLVHSTLEQCDDADFTFTVFFNMKEYTVYVKQRPYLHTFLERVSEMFEVVIFTASQSIYAKQLLDILDPDGRFISCRMYRESCLFSDGNYTKDLTILGVDLAKVAIIDNSPQVFRLQVNNGIPIKSWFDDPLDCALMSLLPFLETLADVDDVRPIIAKRYGNKE 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1747 471 TIGRFAM HIF-SF_euk: dullard-like phosphatase domain 300 463 IPR011948 GO:0016791
Ssu1g1747 471 Pfam NLI interacting factor-like phosphatase 300 460 IPR004274 -
Ssu1g1747 471 SUPERFAMILY HAD-like 288 464 IPR036412 -
Ssu1g1747 471 SMART forpap2 297 441 IPR004274 -
Ssu1g1747 471 ProSiteProfiles FCP1 homology domain profile. 294 453 IPR004274 -
Ssu1g1747 471 Gene3D - 284 467 IPR023214 -
Ssu1g1747 471 PANTHER SCP1-LIKE SMALL PHOSPHATASE 4-RELATED 1 469 - -
Ssu1g1747 471 PANTHER NUCLEAR LIM INTERACTOR-INTERACTING FACTOR-RELATED 1 469 - -
Ssu1g1747 471 CDD HAD_FCP1-like 299 431 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1747 Ssu-Chr1 43191530 43204289 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1747 K17616 - gmx:100786602 876.315