Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1726 ATGGCACTTGCTGGAGCAATCATAGGAGCATCAGTTGGTGGATGGATCAACGATCGATTTGGAAGAAAGAAGGCAATTGTTTTTGCAGATACCCTCTTTTTTATTGGGTCTGTTGTGATGGCTGCTGCCATTAACCCAGCTATTCTAATTGTTGGTCGAGTTTTTGTTGGCCTTGGTGTTGGAATGGCCTCAATGGCATCCCCTTTATACATCTCAGAAGCAGTCACCAACCAGAGCACCGGGAACATGGAGGTGGATGTTAGGAGTTGCAGCAGTACCAGCTTTGACACAAATCATATTGATGATTTTGCTCCCAGAATCACCTCGTTGggaaaagaagaagaagctaaagAAATTTTAAGGAGGATTTACCCTCCCCAGGATGTTGAAGATGAAATTAATGCTTTGAAGGAATCAGTTGAAATGGAAGTCAGGGAAGCTTCAGCTTCAGATAAAGTCAGCATCATGAAGCTGTTGAAAACTAAAACTGTGAGAAGAGGTCTATATGCAGGAATGGGCCTTCAAATCTTCCAGCAGTTTGTGGGGATCAATACTGTCATGTACTACAGCCCCACCATTGTTCAGTTAGCTGGTTTTGCATCCAATAGGGTTGCACTACTTCTGTCACTTGTCATTGCAGGGCTAAATGCATTTGGTTCTATTTTGAGCATATATTTCATTGACAAGACTGGGAGGAGGAAGCTTCTGCTGTTCAGTTTGTCTGGTGTTGTAGTCTCCCTTGTTGTTTTAACTGTTGTTTTTCATGAGACTACAACTCACTCCCCAATGATTAGCACAATTGAAACCTCTCACTTCAACAACACCTGCCCTGATTACAGCACAGCTTTGAACCCTGGTGAATGGGATTGCATGAAATGCCTCAAGGCTTCTCCAGAATGCGGCTGTTGTGCTTCTAGAGGTAACAAGCACTTACCTGGAGCATGCTTGATCTCCAATGATACAACAGAAGATCAGTGCCATAAAGAGGACAGGCTATGGTACACCAGGGGATGTCCTAGCCAATACGGATGGCTTGCATTAATTGGCCTAGCACTCTACATCATATTCTTCTCACCAGGCATGGGAACAGTTCCATGGGTTGTCAACTCTGAGATCTATCCTCTAAGGTACCGAGGAATCTGTGGAGGAATGGCATCTACCTCAAATTGGGTTTCAAATCTCATTGTGGCCCAGTCCTTTTTGTCCTTGACACAGGCTATTGGGACCTCATCTACATTCATGATATTCATATTCATCACTGTTGCAGCCATTATCTTTGTCATCATTTTCGTACCAGAAACCAAAGGACTTCCAATTGAGGAAGTTGAGAACATGCTGGAAAGAAGATCTTTGAACTTCAAGTTTTGGCAGACGAGTCCTGACTCTAGTGAAGTACCAAAGCAAAAGAATCAGTCAGTTTGA 1422 0.4283 MALAGAIIGASVGGWINDRFGRKKAIVFADTLFFIGSVVMAAAINPAILIVGRVFVGLGVGMASMASPLYISEAVTNQSTGNMEVDVRSCSSTSFDTNHIDDFAPRITSLGKEEEAKEILRRIYPPQDVEDEINALKESVEMEVREASASDKVSIMKLLKTKTVRRGLYAGMGLQIFQQFVGINTVMYYSPTIVQLAGFASNRVALLLSLVIAGLNAFGSILSIYFIDKTGRRKLLLFSLSGVVVSLVVLTVVFHETTTHSPMISTIETSHFNNTCPDYSTALNPGEWDCMKCLKASPECGCCASRGNKHLPGACLISNDTTEDQCHKEDRLWYTRGCPSQYGWLALIGLALYIIFFSPGMGTVPWVVNSEIYPLRYRGICGGMASTSNWVSNLIVAQSFLSLTQAIGTSSTFMIFIFITVAAIIFVIIFVPETKGLPIEEVENMLERRSLNFKFWQTSPDSSEVPKQKNQSV 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1726 473 Gene3D MFS general substrate transporter like domains 330 453 IPR036259 -
Ssu1g1726 473 SUPERFAMILY MFS general substrate transporter 3 79 IPR036259 -
Ssu1g1726 473 PRINTS Sugar transporter signature 50 69 IPR003663 GO:0016020|GO:0022857|GO:0055085
Ssu1g1726 473 PRINTS Sugar transporter signature 178 188 IPR003663 GO:0016020|GO:0022857|GO:0055085
Ssu1g1726 473 PRINTS Sugar transporter signature 370 382 IPR003663 GO:0016020|GO:0022857|GO:0055085
Ssu1g1726 473 PRINTS Sugar transporter signature 347 368 IPR003663 GO:0016020|GO:0022857|GO:0055085
Ssu1g1726 473 Pfam Sugar (and other) transporter 111 259 IPR005828 GO:0016021|GO:0022857|GO:0055085
Ssu1g1726 473 Pfam Sugar (and other) transporter 2 79 IPR005828 GO:0016021|GO:0022857|GO:0055085
Ssu1g1726 473 Pfam Sugar (and other) transporter 341 445 IPR005828 GO:0016021|GO:0022857|GO:0055085
Ssu1g1726 473 Gene3D MFS general substrate transporter like domains 1 85 IPR036259 -
Ssu1g1726 473 Gene3D MFS general substrate transporter like domains 104 274 IPR036259 -
Ssu1g1726 473 SUPERFAMILY MFS general substrate transporter 109 443 IPR036259 -
Ssu1g1726 473 PANTHER INOSITOL TRANSPORTER 2-RELATED 1 81 - -
Ssu1g1726 473 PANTHER INOSITOL TRANSPORTER 2-RELATED 109 462 - -
Ssu1g1726 473 ProSiteProfiles Major facilitator superfamily (MFS) profile. 1 435 IPR020846 GO:0022857
Ssu1g1726 473 PANTHER PROTON MYO-INOSITOL COTRANSPORTER 1 81 - -
Ssu1g1726 473 PANTHER PROTON MYO-INOSITOL COTRANSPORTER 109 462 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1726 Ssu-Chr1 42724973 42727498 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1726 15 472 Organic Solute Cotransporters AT1G30220 60.243 0.0 599
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1726 K08150 - gmx:100783605 758.444