Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1725 ATGGAAGGAGGTGTACCAGAGGCTGATATGTCAGCTTTTAGAGAATGTTTGTCTCTTTCTTGGAAGAATCCTTACGTTCTTCGCCTTGCTTTCTCTGCTGGAATTGGAGGCCTTCTCTTTGGTTATGACACTGGAGTTATATCCGGGGCTCTTTTGTATATCAGAGATGATTTCAACGCAGTTGACAGGAAGACTTGGCTTCAGGAAGCTATAGTGAGTACTGCAATTGCTGGAGCAATCATAGGAGCTTCAGTTGGTGGATGGATCAACGATcgatttggaagaaaaaaaggaattgTTCTAGCAGATACCCTCTTTTTTATTGGGTCTGTTATCATGGCTGCTGCCCCCAGCCCAGCTGTTATCATTGTGGGTCGAGTATTTGTTGGCATTGGTGTTGGCATGGCTTCAATGGCATCCCCCCTCTACATTTCAGAGGCTTCCCCAACCAGAGTAAGAGGAGCCCTTGTCAGCCTTAATAGTTTTCTCATCACTGGGGGACAGTTCCTTTCCTACCTCATCAACTTGGCCTTCACCAAGGCACCTCAGCCATGGAGGTGGATGTTAGGAGTAGCAGCAGTACCCGCTTTCATACAAATTATACTAATGTTGACGCTCCCAGAATCGCCTCGTTGGCTGTACCGCAAGGGTAGGGAAGAGGAAGCAAAATCGATTCTGAAAAAGATTTACCCGCCTCACGACGTTGAAGGTGAAATTCAGGCTTTGAAGGAATCAGTTGATATGGAAATTAAGGAAGCAGAATCATCAGAGAATATCAGCATAATCAAACTTTTGAGAACCACAGCTGTGAGAAGAGGTTTATATGCAGGCGTGGGCCTCGGAATCTTCCAGCAGTTTGTGGGGATTAACACGGTGATGTACTACAGTCCCACAATTGTTCAGTTGGCTGGTTTCGCATCTAACAGAACAGCACTGCTTCTGTCACTCATCACATCTGGCCTGAATGCATTTGGCTCAATTTTGAGCATATACTTCATTGACAAGACTGGGAGGAAAAAGCTTGCTCTGATCAGTTTGTGTGGTGTTGTGTTCTCTCTGGCTCTCCTAACTGTCACTTTTCGTGAAAGTGAAATCCACGCCCCAATGGTTAGTGCCTTGCAAACCTCTCAATTCAACAACACCTGCCCTGACTACAAAGCAGCTGTGAACAGTGGTGAATGGAGTTGCATGACATGCCTAAAGGCTTCACCATCTTGTGGTTTTTGTGCTGCTGATGACAAGCTCTTACCTGGGGCTTGTTTGATCTCCAATAAGCACACAAAGGCATTGTGTGGCAGTGATCATAGGGCATGGTACACTAGGGGATGTCCTAGCAAATATGGTTGGGCTGCTCTAATTGGCCTTGCTCTttacatcattttcttttcacctGGGATGGGAACTGTTCCATGGGTTGTCAACTCTGAGATCTACCCCTTGAGGTACAGAGGAGTTTGTGGAGGAATAGCATCCACAGCTGTTTGGATTTCCAACCTTATTGTTTCTGAATCCTTTTTGTCCTTGACAAAAGCTATTGGGACAGCATGGACATTCATGATGTTTGGAATTGTGGCTATTGTGGCAATTTTctttgtcattgtttttgtaCCCGAGACCAAAGGGGTTGCCATGGAGGAAATAGAGAAGATGCTGGAACAAAGATCTGTGCGGTTCAAGTTTTGGCAGAAGAGAGATTCTGGCTCTGAGAAGCACTGA 1716 0.4429 MEGGVPEADMSAFRECLSLSWKNPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFNAVDRKTWLQEAIVSTAIAGAIIGASVGGWINDRFGRKKGIVLADTLFFIGSVIMAAAPSPAVIIVGRVFVGIGVGMASMASPLYISEASPTRVRGALVSLNSFLITGGQFLSYLINLAFTKAPQPWRWMLGVAAVPAFIQIILMLTLPESPRWLYRKGREEEAKSILKKIYPPHDVEGEIQALKESVDMEIKEAESSENISIIKLLRTTAVRRGLYAGVGLGIFQQFVGINTVMYYSPTIVQLAGFASNRTALLLSLITSGLNAFGSILSIYFIDKTGRKKLALISLCGVVFSLALLTVTFRESEIHAPMVSALQTSQFNNTCPDYKAAVNSGEWSCMTCLKASPSCGFCAADDKLLPGACLISNKHTKALCGSDHRAWYTRGCPSKYGWAALIGLALYIIFFSPGMGTVPWVVNSEIYPLRYRGVCGGIASTAVWISNLIVSESFLSLTKAIGTAWTFMMFGIVAIVAIFFVIVFVPETKGVAMEEIEKMLEQRSVRFKFWQKRDSGSEKH 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1725 571 PRINTS Sugar transporter signature 37 47 IPR003663 GO:0016020|GO:0022857|GO:0055085
Ssu1g1725 571 PRINTS Sugar transporter signature 452 473 IPR003663 GO:0016020|GO:0022857|GO:0055085
Ssu1g1725 571 PRINTS Sugar transporter signature 475 487 IPR003663 GO:0016020|GO:0022857|GO:0055085
Ssu1g1725 571 PRINTS Sugar transporter signature 284 294 IPR003663 GO:0016020|GO:0022857|GO:0055085
Ssu1g1725 571 PRINTS Sugar transporter signature 123 142 IPR003663 GO:0016020|GO:0022857|GO:0055085
Ssu1g1725 571 PANTHER PROTON MYO-INOSITOL COTRANSPORTER 1 571 - -
Ssu1g1725 571 CDD MFS_HMIT_like 32 538 - -
Ssu1g1725 571 Gene3D MFS general substrate transporter like domains 421 559 IPR036259 -
Ssu1g1725 571 ProSiteProfiles Major facilitator superfamily (MFS) profile. 29 540 IPR020846 GO:0022857
Ssu1g1725 571 SUPERFAMILY MFS general substrate transporter 18 549 IPR036259 -
Ssu1g1725 571 Gene3D MFS general substrate transporter like domains 20 378 IPR036259 -
Ssu1g1725 571 Pfam Sugar (and other) transporter 447 550 IPR005828 GO:0016021|GO:0022857|GO:0055085
Ssu1g1725 571 Pfam Sugar (and other) transporter 30 360 IPR005828 GO:0016021|GO:0022857|GO:0055085
Ssu1g1725 571 TIGRFAM SP: MFS transporter, sugar porter (SP) family 20 360 IPR003663 GO:0016020|GO:0022857|GO:0055085
Ssu1g1725 571 ProSitePatterns Sugar transport proteins signature 2. 128 153 IPR005829 GO:0016021|GO:0022857|GO:0055085
Ssu1g1725 571 PANTHER GENERAL SUBSTRATE TRANSPORTER 1 571 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1725 Ssu-Chr1 42515133 42519941 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1725 1 571 Organic Solute Cotransporters AT1G30220 70.312 0.0 830
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1725 K08150 - gmx:100796800 1028.85