Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1716 ATGGATCACCATGAGGATGAAAGTAGCAGCAAACAAGATGATGAGGAAGCTGTTGCTCGCCttgaggaaataaaaaaatctattgagGCGAAGATGGCTTTACGTCAAAGCAATTTGAATCCTGAAAGGCCCGACTCAGGATTTTTAAGGACATTGGATTCCAGCATTAAGCGCAACACTGCAGTTATCAAGAAGCTGAAGCAGATTAATGAAGAGCAGCGTGAAGCACTGATGGACGAGTTGCGAAGTGTCAACTTAAGCAAATTTGTCAGTGAAGCTGTGACTGCTATATGTGATGCCAAGCTTAGAAGTTCTGATATACAAGCTGCAGTTCAGATCTGTTCTTTGCTTCATCAAAGGTACAAGGACTTTGCACCAAGCCTGATTCAAGGGCTTCTAAAAGTCTTCTCTCCTGGAAAACCTGGTGATGAATCAGATACAGACAGAAACTTGAAGGCAATGAAGAAGCGCAGCACTCTGAAGCTTCTATTGgaacttttttttgttggagttattgaagatggTGGCATTTTTATCAATATCATAAAAGATCTTACGAGTGGGGAAATGCTAAAAGATCGGGATGCTGCACAAACAAGTTTGACCCTTCTTTCTAGTTTTGCTCGGCAAGGAAGAATTTTTCTAGGACTTTCTGTTAGTGGGCCGGAAATTCATGAAGagTTTTTTAAAGGCCTTAACATCACAGCGGATCAGAAGAAAGTTTTCCGGAAAGCATGCTATTCCTTTTATGATGCTGCAGCTGAACTACTTCAGTCCGAGCATTCTTCACTTCGATTAATGGAGCATGAAAATTCTAAGATTTTGAATGCAAAAGGAGAGCTCAGTGATGAAAATATTGCTTCATATGAAAAGCTTCGTAAATCCTATGACCATTTGTACCGTAATGTCTCATCATTAGCAGAAGCACTTGATATGCAGCCTCCCATAATGCCAGAGGATGGCCACACAACTAGGGTTACCAGTGGTGAGGAGGGTATTTCTTCTGCTTCTGGTAAAGATTCTTCTGTTGTTGAACCCATATGGGATGATGAAGATACAAGGACTTTCTATGAATGTTTACCTGATCTTAGAGCTTTTGTTCCTGCTGTGCTTTTGGGAGAAGCAGAGCCGAAAAGCAGTGAGCAATCTGCAAAGAGTCAAGACCAAACAACTGAAATATTACCTGAATCAGACAAAGGGCAACAGACCACCCATGAAAGTGGAGAGGTCTCTACAGAGTCTGATGCTTTGCCAGAGGCAGAAAGCACAGAAAGAGTGAAGGATAAGGAGGAAAAAGACAAGTCTAAAGAATTGgacaaagagaaggaaaaagaaaaagataatgatagaaaaggagaaaatgagaaagacaaACTCAGAAGTCTTGAAGGGACAAATTTGGATGCTCTACTGCAGAGGCTTCCGGGTTGTGTGAGCCGGGACCTTATAGATCAATTAACTGTGGAGTTTTGTTAtctaaattcaaaatcaaatcggAAAAAGCTTGTGAGGGCTTTGTTTAATGTACCAAGGACATCTCTGGAACTGCTACCATATTATTCACGCATGGTTGCCACACTCTCGACTTGTATGAAAGATGTCTCCTCCATTTTGTTGCAGATGTTGGAGGAGGAATTCaacttcttaataaataaaaagGATCAGATGAACATCGAGACAAAGATAAGGAACATCAGGTTCATCGGAGAACTTTGCAAGTTCAAAATTGCCCCTCCTGGCCTAGTCTTTAGTTGTTTGAAGGCTTGTTTAGATGATTTTACACATCACAACATTGATGTAGCTTGCAATCTTCTTGAAACATGTGGCCGTTTTCTGTATCGGTCTCCGGAAACTACTATACGTATGGCTAACATGTTGGAGATACTGATGCGCttgaaaaatgtcaaaaacttGGATCCGAGACATAGCACTTTGGTGGAGAATGCATACTATCTTTGCAAACCACCAGAAAGATCTGCGCGAGTAGCTAAAGTTCGTCCTCCATTGCATCagTATATCAGAAAATTACTTTTCTCTGATCTTGATAAGTCTACCATTGAGCATGTGCTGAGGCAACTGCGTAAATTACCATGGAATGAATGTGAACCATATCTTTTGAAATGCTTCATGAAGGTCCACAAAGGCAAATATGGTCACATCCACCTGATTGCATCTCTTGCTGCTGGGTTAAGTCGCTATCATGATGAATTTGCTGTAGCTATCGTTGATGAGGTTCTGGAGGAGATTAGAGTTGGGCTGGAGTTAAATGACTATGGGATGCAGCAAAGACGCATTGCCTACATGCGATTCTTGGGGGAGCTCTACAACTATGAGCATGTAGACTCATCTGTTATTTTTGAGACTCTCTATCTCATTCTCATCTATGGCCATGGGACATTGGAGCAAGATGTACTTGATCCGCCTGAAGATTGTTTTCGCATAAGGTTGATCATTACTCTGCTTGAAACTTGTGGGCATTACTTTGATCGTGGCTCTTCTAAGAGGAAACTTGATCGATTCCTAATACACTTCCAGAGGTATATTTTAAGCAAAGGGGCACTTCCACTGGACATCGAATTTGACTTACAGGATCTGTTTGCGGACTTGCGTCCCAATATGGTTCGTTACACTTCTATTGAGGAAGTGAATGCAGCTCTAGTAGAACTCGAGGAACATGATTGTATAGTATCTGCTGATAAGGCCAGTAATGAAAAACATTCTGACACTGAGAAGCCTTTAAGTAGGACCACTTCTACTACTAAAGTGGTTGGCAATGGACAGAGCATTGATAATGGTACAGAGGAAAATGGAGTGCAAGATGATGTTAATGACAGTGAGACTGATTCAGGGAGTGACACAATTGGTGTGGAGGGACATGATGATGAAGAGTTGGATGAGGAGAATCAGGATGATGGGTGTGAGACTGAGGAGGAGGATGACGACAACGATGATGGGCCTGGACCTGCTTCTGACGAGGAGGATGAAGTCCATGTGAGACAAAAAGTGACTGAGGTGGATCCTCTTGAAGAAGCCAATTTTGAGCAGGAGCTCAAGGCTGTAGTACAGGAGAGTATGGAACAACGAAGACAGGAGCTGCGAGGTCGTCCTGCGTTGAACATGATGATTCCAATGAATGTATTTGAGGGATCTGCCAAGGATCACCATGGGAGGGGAATTGGTGGGGAAAGTGGTGATGAGGCACTGGATGAGGATACTGGTGGAAACAAAGAGGTTCAGGTGAGAGTTCTTGTGAAGCGTGGAAACAAGCAGCAAACAAAGCAGATGTTCATCCCACGGAATTCCTCACTGGTGCAGAGTACAAAACAGAAAGAAGCAGCGGAGCTTCAAGAGAAAGAAGACATCAAGAGGCTTGTCTTGGAGTATAATGATAGAGAAGAGGAGGAACTTAATGGATTAGGGACCCAGCCAACAAACTGGATGCAGGGTGTAGGTAACAAGGCTGGTGGCCGTGGCAGCACTTTGGAAGGAAACAGTGGCAGGGGTAGCGGATCAAGACATCGGCATCATAATTATTCTGGCAGTGGAATCTACTACagcagaagaaaataa 3570 0.4109 MDHHEDESSSKQDDEEAVARLEEIKKSIEAKMALRQSNLNPERPDSGFLRTLDSSIKRNTAVIKKLKQINEEQREALMDELRSVNLSKFVSEAVTAICDAKLRSSDIQAAVQICSLLHQRYKDFAPSLIQGLLKVFSPGKPGDESDTDRNLKAMKKRSTLKLLLELFFVGVIEDGGIFINIIKDLTSGEMLKDRDAAQTSLTLLSSFARQGRIFLGLSVSGPEIHEEFFKGLNITADQKKVFRKACYSFYDAAAELLQSEHSSLRLMEHENSKILNAKGELSDENIASYEKLRKSYDHLYRNVSSLAEALDMQPPIMPEDGHTTRVTSGEEGISSASGKDSSVVEPIWDDEDTRTFYECLPDLRAFVPAVLLGEAEPKSSEQSAKSQDQTTEILPESDKGQQTTHESGEVSTESDALPEAESTERVKDKEEKDKSKELDKEKEKEKDNDRKGENEKDKLRSLEGTNLDALLQRLPGCVSRDLIDQLTVEFCYLNSKSNRKKLVRALFNVPRTSLELLPYYSRMVATLSTCMKDVSSILLQMLEEEFNFLINKKDQMNIETKIRNIRFIGELCKFKIAPPGLVFSCLKACLDDFTHHNIDVACNLLETCGRFLYRSPETTIRMANMLEILMRLKNVKNLDPRHSTLVENAYYLCKPPERSARVAKVRPPLHQYIRKLLFSDLDKSTIEHVLRQLRKLPWNECEPYLLKCFMKVHKGKYGHIHLIASLAAGLSRYHDEFAVAIVDEVLEEIRVGLELNDYGMQQRRIAYMRFLGELYNYEHVDSSVIFETLYLILIYGHGTLEQDVLDPPEDCFRIRLIITLLETCGHYFDRGSSKRKLDRFLIHFQRYILSKGALPLDIEFDLQDLFADLRPNMVRYTSIEEVNAALVELEEHDCIVSADKASNEKHSDTEKPLSRTTSTTKVVGNGQSIDNGTEENGVQDDVNDSETDSGSDTIGVEGHDDEELDEENQDDGCETEEEDDDNDDGPGPASDEEDEVHVRQKVTEVDPLEEANFEQELKAVVQESMEQRRQELRGRPALNMMIPMNVFEGSAKDHHGRGIGGESGDEALDEDTGGNKEVQVRVLVKRGNKQQTKQMFIPRNSSLVQSTKQKEAAELQEKEDIKRLVLEYNDREEEELNGLGTQPTNWMQGVGNKAGGRGSTLEGNSGRGSGSRHRHHNYSGSGIYYSRRK 1189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1716 1189 PANTHER - 3 1188 - -
Ssu1g1716 1189 MobiDBLite consensus disorder prediction 991 1013 - -
Ssu1g1716 1189 MobiDBLite consensus disorder prediction 327 341 - -
Ssu1g1716 1189 MobiDBLite consensus disorder prediction 379 411 - -
Ssu1g1716 1189 MobiDBLite consensus disorder prediction 1050 1076 - -
Ssu1g1716 1189 SUPERFAMILY ARM repeat 72 189 IPR016024 -
Ssu1g1716 1189 Coils Coil 11 31 - -
Ssu1g1716 1189 MobiDBLite consensus disorder prediction 913 936 - -
Ssu1g1716 1189 MobiDBLite consensus disorder prediction 375 459 - -
Ssu1g1716 1189 Coils Coil 428 448 - -
Ssu1g1716 1189 SUPERFAMILY ARM repeat 666 891 IPR016024 -
Ssu1g1716 1189 MobiDBLite consensus disorder prediction 1134 1189 - -
Ssu1g1716 1189 MobiDBLite consensus disorder prediction 1050 1077 - -
Ssu1g1716 1189 SMART if4_15 468 656 IPR003890 GO:0003723|GO:0005515
Ssu1g1716 1189 SMART if4_15 56 278 IPR003890 GO:0003723|GO:0005515
Ssu1g1716 1189 SMART if4_15 671 872 IPR003890 GO:0003723|GO:0005515
Ssu1g1716 1189 Gene3D - 8 318 - -
Ssu1g1716 1189 MobiDBLite consensus disorder prediction 311 343 - -
Ssu1g1716 1189 MobiDBLite consensus disorder prediction 418 459 - -
Ssu1g1716 1189 Gene3D - 423 664 - -
Ssu1g1716 1189 SUPERFAMILY ARM repeat 465 659 IPR016024 -
Ssu1g1716 1189 MobiDBLite consensus disorder prediction 900 1013 - -
Ssu1g1716 1189 Gene3D - 666 895 - -
Ssu1g1716 1189 PANTHER NONSENSE-MEDIATED MRNA DECAY PROTEIN 2 UP-FRAMESHIFT SUPPRESSOR 2 3 1188 IPR039762 GO:0000184
Ssu1g1716 1189 Pfam MIF4G domain 673 867 IPR003890 GO:0003723|GO:0005515
Ssu1g1716 1189 Pfam MIF4G domain 471 655 IPR003890 GO:0003723|GO:0005515
Ssu1g1716 1189 MobiDBLite consensus disorder prediction 958 990 - -
Ssu1g1716 1189 Pfam Up-frameshift suppressor 2 991 1127 IPR007193 -
Ssu1g1716 1189 Coils Coil 539 559 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1716 K14327 - gmx:100786092 2143.62