Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1712 ATGGCTTGCGTGAAATTGGGTTCCAAAGCTGATGCTTTCCAGCGTCAAGGGCAGGCCTGGTTCTGCACAACTGGGCTTCCTAGTGATATAGTTGTTGAAGTTGGAGAGATGTCCTTTCATCTTCACAAGTTCCCTTTGCTCTCTAGAAGTGGGATTCTGGAAAGAATGATTGCCGAGGCTTCTGAATCAGAGGAAGAATGTGTCATATCCCTTGGAGACATTCCTGGTGGGGCCAAAACATTTGAACTTGTGGCGAAATTCTGCTACGGTGTGAAACTTGAACTTACAGCATCAAATGTTGTGTACCTTTGGTGTGCTGCGGAGCGTCTTGAAATGACTGAGGAATATGGTGAAGGCAATCTTATTTCACAGGCTGAAACCTTTTTTAATCAAGTGGTCCTCCACAGTTGGAAAGACTCTCTGAGGGCACTTCAAACCTGTGATGATGTTTTGTCCCATGCTGAAGAGCTCCACATTGTGAAAAGATGCATTGAATCACTGGCAGCAAAGGCATCTACTGACCCAAATTTATTTGGGTGGCCAGTGCTGGAGCGTGGTGGTCCTTTGCAGAGCCCCGGTGGAAGCGTTTTGTGGAATGGAATAAGTACTGGGGCAAgaccaaaaaattcaagttcAGATTGGTGGTATGAGGATGTAACGAATTTGAGTTTACCTCTTTATAAGAGGTTGATAGCTGTCATGGAATCTCGAGGCATTAGGCAAGAGATTATTGCCGGTTCTCTTGCTTTCTATGCTAAAACATATCTTCCTGGGTTAAATCGACGTCAGGTTTCTGGTGAGTCCAGCCGTCTGACACAGGTAGCTATGGGGTCTCCACTATGTGAAGACGATCAGAAGATTCTCCTGGAAGAGATTGATGGATTGCTCCCAATGCAGAAGGGCCTGGTCCAAACAAAGTTCCTGTTTGGTCTACTTCGAACAGCCATGATTCTACGAGTGAACCCCTCTTGCATATCAAACTTGGAGAAACAGATTGGCATGCAGCTTGATCAAGCTACTCTGGAAGATCTCTTGATGCCGAATTTCTCATATTCAATGGAGACTCTTTACAATGTTGACTGTGTGCAAAGAATTCTTGACCATTTCCTTGCCATGGATCAGGTTACTGGAGGTGCCTCTCCATGCTCAATTGATGATGGTCAATTGATTGGATCACCTTCACTGACACCAATCACCATGGTAGCCAAGCTGATTGACGGTTACCTGGCAGAGGTTGCCCCAGATGTCAACTTAAAACTTCCTAAGTTTCAAGCCCTTGCTGCTGCTGTTCCAGAGTATGCCAGGCCTTTGGATGATGGTTTATATCGCGCtatagatatttatttgaagTCTCACCCATGGTTGGTGGAGTCTGAGAGAGAGCAACTATGTAGGCTGATGGATTGCCAGAAGCTCTCATTAGAAGCATGCACCCATGCTGCACAGAACGAGAGGCTACCCATCAGAATAATAGTTCAAGTTCTATTTTTTGAGCAGCTCCAGCTCCGGACATCAATCGCGGGTTGCTTTCTAGTTTCGGATAATCTTGATGGATCAAGGCAGTTAAGAAGTGGTTTTGTTGGATCTACAGAGGGTGGCTGGGCGTCAGCCGTGAAGGAAAATCAGGTTTTGAAAGTTGGAATGGATAACATGAGGATGAGGGTGTCTGAGCTTGAGAAGGAGTGCTCAAACATGAGGCAGGAGATTGAGAAATTGGGTCGCACAAAGGGATCAAGCACTTGGGGAACTGTGTCTAAGAAACTTGGGTTCAAGATAAAGTCTCAGATGTGTAGTGCTCAAGAAGGGTCAGTCAGCAACCAGAACAATGCAAATAGTAAGGTTGAGAAGTTGAAGGACAGACATGTAAAGCACAAGAAAAGTTCTTCTATTAGTGACAAAGCATCAGTCTCTTCAATTGTTCATTCGTAA 1929 0.4453 MACVKLGSKADAFQRQGQAWFCTTGLPSDIVVEVGEMSFHLHKFPLLSRSGILERMIAEASESEEECVISLGDIPGGAKTFELVAKFCYGVKLELTASNVVYLWCAAERLEMTEEYGEGNLISQAETFFNQVVLHSWKDSLRALQTCDDVLSHAEELHIVKRCIESLAAKASTDPNLFGWPVLERGGPLQSPGGSVLWNGISTGARPKNSSSDWWYEDVTNLSLPLYKRLIAVMESRGIRQEIIAGSLAFYAKTYLPGLNRRQVSGESSRLTQVAMGSPLCEDDQKILLEEIDGLLPMQKGLVQTKFLFGLLRTAMILRVNPSCISNLEKQIGMQLDQATLEDLLMPNFSYSMETLYNVDCVQRILDHFLAMDQVTGGASPCSIDDGQLIGSPSLTPITMVAKLIDGYLAEVAPDVNLKLPKFQALAAAVPEYARPLDDGLYRAIDIYLKSHPWLVESEREQLCRLMDCQKLSLEACTHAAQNERLPIRIIVQVLFFEQLQLRTSIAGCFLVSDNLDGSRQLRSGFVGSTEGGWASAVKENQVLKVGMDNMRMRVSELEKECSNMRQEIEKLGRTKGSSTWGTVSKKLGFKIKSQMCSAQEGSVSNQNNANSKVEKLKDRHVKHKKSSSISDKASVSSIVHS 642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1712 642 CDD BTB_POZ_NPY3-like 19 122 - -
Ssu1g1712 642 PANTHER OS12G0117600 PROTEIN 1 616 IPR043454 -
Ssu1g1712 642 ProSiteProfiles NPH3 domain profile. 213 501 IPR027356 -
Ssu1g1712 642 PANTHER - 1 616 - -
Ssu1g1712 642 Pfam BTB/POZ domain 27 113 IPR000210 GO:0005515
Ssu1g1712 642 Pfam NPH3 family 213 477 IPR027356 -
Ssu1g1712 642 Gene3D Potassium Channel Kv1.1; Chain A 11 133 IPR011333 -
Ssu1g1712 642 SUPERFAMILY POZ domain 16 114 IPR011333 -
Ssu1g1712 642 Coils Coil 541 575 - -
Ssu1g1712 642 MobiDBLite consensus disorder prediction 601 642 - -
Ssu1g1712 642 ProSiteProfiles BTB domain profile. 28 97 IPR000210 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1712 Ssu-Chr1 42239087 42242913 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1712 8 630 EF-hand Containing Proteins AT3G44820 47.005 0.0 572
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1712 - - gmx:100779836 1212.21