Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1711 ATGGGCTGTGTTTTGTCAAGTATTGATGAGGATGAGAAGGTTGGCCAGTGCAGGGAAAGGAAGAAGGCAATTAAACAGTTGGTGAATATTAGAGGGGAGTTTTCTGATTCCCTGTTGGCTTATTTGAGAGCATTAAGGAACACTGGTGCTACCCTTAGGCAATTCACTGAGTCTGATACTATTGAGTTTGAAACCGCCTCTAATGGCATGGCTGAGCCAGCTTCTCCACCTTCCCATCTGCCCGCATCCCCTCTGCTACCACCTCCACGGCCTCCTTTTCTTGTTGACAAGACTACAGTGCACATAAATGAAATACTAGAGAATGATGACAGCAATGTTCCTCCACTGCAAGTTGATCCAAGTTTGAGCTCGTTACGGCTGTTTCGATGCAATGTTAGAAAAGAAATAGTAGAATCAGTGGAGGAGGATAATTGGGAAGAAACCAAAACAGAATTTGAGGACGAAGAAGCAGAAGCAGCAGCAGAAGCTGCTGTAATTGCTGAAAAATTGCGTAGGGGAAAACAACAGTTGATAGAACCAGTTGACGAAAATTCCTCTGCAATGAGTTTGTGTGGAAAAGACACTACAGCTATGCCTGTGGTGGTTGGTAGAAGTGGGAAAACATTGGAGGGTATAGGTAAAGATTTGGATGATCATTTCCTGAAAGCATCTGGATGTATAAAGGAAATTGCTGTTCTTATTGATATCAGTGGAGGAGATACTCTTCTGCGGCAGAATTCTGGGCGTTATGAAAGGAAGAGAGGCAATTCTGCAAAGGTCTTCAGTGTACTGTCATGGAGTAGGTATTCAAAATCACCCCCATCCACCAAAGATGGTACTGAGTTTTCTGGTCGTAGTGAACCATGCAAGCCTGGAGCTCATTGTGccacacttaaaaaattatatgcagCAGAGAAGAAACTTTACAAGGCAGTAAAGGAGGAGGGAATTGCTGCATCGGAGTTTGACAGGAAGTCCTCATTATTGCGTAAACAAGAGGATGAAAACCTTGACTTTGTCAAGATTGACAAAACTCGATCAAGTGTTGAGAAGTTGGAGTCCGATTTAATAAGCCTACGGCAGTGCATCAGTGAAACAACTGCatcaattttggaaattatagATGAGGAGCTTTTACCTCAGCTGGTTGCATTAACTGCAGGGTTGACACAAATGTGGAGGACAATGCATGAGTCCCATCGAGCCCAAGCGCTCATCTCCCAGCAGTTGAGTAACCTCAGTGATAATCATAACACGATACTAAATTCTGAATATCATCACCAGGCTACAAAACAATTTGAGATTGAGGCCTCTTATTGGTATAATAGCTTTTGCAAACTTGTAAAATCTCAACGGGAGTATGTGAGGACCCTCCATGAGTGGATTGGGCATACCAACTGCCTCAGGGATGGTAATGAATGTAGCGATCACTCTTCTATTCTAACCATTTGTGCAGAGTGGAAGCGTGGGCTTGACGGGTTACCTGACAAGGAGACCTCTGATGCAATAAAAAGCCTTTTGTCATCCATCCGTTCCATAATTGCCCAACAGACCGAGGAAGATAACATTCTGAAAAGGTTACAAAAACTTAAAAGGAAGTTCCAAAAATGCTTGAACTCCCTGGCTGAGATGCAGCAAAGAATAGATGGAGATATGGCTGATACAAGCCCCAAGCATCCAATACATCTTAAAAAAACTGAAACAGAAGCCGTTAAGAAGCAAGTGGAAATTGTGGAAGCAAATTATTTGGAAGCTGTTCAGGATAGTAGGGCCATGACCCTAGATCAACTCCAAACTAGACTTCCCCCTCTCTTCCAGTCACTGATGGAATTTTCAAGTGCCTCAGCCCAGGCAATTGAGGCTATCAATAACCCAGTCAAGCCAGTAGAGTAG 1893 0.4268 MGCVLSSIDEDEKVGQCRERKKAIKQLVNIRGEFSDSLLAYLRALRNTGATLRQFTESDTIEFETASNGMAEPASPPSHLPASPLLPPPRPPFLVDKTTVHINEILENDDSNVPPLQVDPSLSSLRLFRCNVRKEIVESVEEDNWEETKTEFEDEEAEAAAEAAVIAEKLRRGKQQLIEPVDENSSAMSLCGKDTTAMPVVVGRSGKTLEGIGKDLDDHFLKASGCIKEIAVLIDISGGDTLLRQNSGRYERKRGNSAKVFSVLSWSRYSKSPPSTKDGTEFSGRSEPCKPGAHCATLKKLYAAEKKLYKAVKEEGIAASEFDRKSSLLRKQEDENLDFVKIDKTRSSVEKLESDLISLRQCISETTASILEIIDEELLPQLVALTAGLTQMWRTMHESHRAQALISQQLSNLSDNHNTILNSEYHHQATKQFEIEASYWYNSFCKLVKSQREYVRTLHEWIGHTNCLRDGNECSDHSSILTICAEWKRGLDGLPDKETSDAIKSLLSSIRSIIAQQTEEDNILKRLQKLKRKFQKCLNSLAEMQQRIDGDMADTSPKHPIHLKKTETEAVKKQVEIVEANYLEAVQDSRAMTLDQLQTRLPPLFQSLMEFSSASAQAIEAINNPVKPVE 630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1711 630 MobiDBLite consensus disorder prediction 67 91 - -
Ssu1g1711 630 SUPERFAMILY BAR/IMD domain-like 432 622 IPR027267 -
Ssu1g1711 630 MobiDBLite consensus disorder prediction 77 91 - -
Ssu1g1711 630 PANTHER REDUCTASE SUBUNIT C, PUTATIVE (DUF630 AND DUF632)-RELATED 1 628 - -
Ssu1g1711 630 Pfam Protein of unknown function (DUF632) 212 511 IPR006867 -
Ssu1g1711 630 Pfam Protein of unknown function (DUF630) 1 58 IPR006868 -
Ssu1g1711 630 Coils Coil 527 547 - -
Ssu1g1711 630 PANTHER UNCHARACTERIZED 1 628 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1711 Ssu-Chr1 42181148 42189079 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1711 1 88 Acyl Lipid Metabolism Gene Families AT2G27090 35.417 1.56e-08 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1711 - - gmx:100809759 954.896