Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1708 ATGGGGGAAGAAGGAGGGGGTATTATGCGGAGGAGGAGGGGTTGCACGTTTCAGAAAAACGACTTCCTCCCTGAGGAGTCGTTTAAGAGTTGGGGGAACTACACGAGGGCGCTGATGGACACTCCGGGGAGGCTGAAGGATCGGGTCCTGACCCGATCCGATGAGCGCGTGGAGGTGGTGGAGATGAGGGCGCGTAGCAGCCACGAGATGAAGAAGGCGCTCAACTGGTGGGACCTCATGTGGTTCGGGATCGGAGCCGTCATCGGCGCCGGAATATTCGTCCTCACCGGAGTCGAGGCCAGGGAGGTCGCCGGCCCGGCGGTGATATTGTCGTACGTGGTGTCCGGCATCTCCGCCTTGCTGTCCGTGTTCTGTTACACCGAGTTTGCCGTCGAAATCCCCGTCGCGGgTGGGTCATTTGCCTACTTAAGAGTGGAGCTAGGAGACTTTGTGGCCTTCATAGCCGCGGGAAACATCCTTCTCGAATACATAGTAAGTTGCGCCGCCGTAGCAAGGTCATGGACCTCATACTTCGCCACCCTTTGCAACAAAAACCCTAATGATTTCCGCATAGTGGTCCATGACATGAACCCCAATTATGGCCACCTTGACCCTATTGcggttttagtccttgcaatcATATGCATCCTTGCGGTCTACAGCACCAAAGGCTCTTCAGTCTTCAACTACATTGCCTCGGTGGTACACATGGTCATCATTGTCTTCATCATCATAGTGGGTCTTCTCCATGCCAAGCCTCAAAACTATGAACCCTTTGCCCCCTTTGGTGCTAGAGGTGTGTTTCAAGCTTCAGCTGTGCTTTACTTTGCTTATGTGGGGTTTGATGCTGTTGCAACCATGGCTGAAGAGACCAAGAACCCTTCAAGGGACATTCCAATTGGTCTTGTGGGTTCAATGTTGATCACCACAGCGGCATATTGCTCGCTTGCAGCTACACTATGCCTCATGCAACCATATAGTGCTATTGACATAAATGCACCCTTTTCAGCTGCGTTTAGTGCTATAGGGTGGGACTGGGCTAAGTACATTGTTGCATTGGGTGCTTTGAAGGGAATGACCACAGTGTTGTTGGTGAGTGCGGTGGGTCAAGCTCGGTATCTGACCCACATAGCACGTACCCACATGATGCCTCCTTGGTTTGCTCTTGTGGATGAGCACACTGGCACACCTGTGAATGCCACAATTGCAATGGTTGTGGCCTCTGCTGTGATTGCTTTCTTCACTGACCTTCAGATTCTCTCTAACCTCTTGTCAATCTCCACTCTCTTTATCTTCATGTTTGTGGCAGTTGCTCTCCTTGTGCGTAGGTACTACTCTAGTGGGGTGACAACCAAGGGGAACCAAATCAAGCTCATTGTGTTCATTCTGTTGATTATTGGCTCTTCATGTGGGATTTCGTGTTATTGGGCCCTTAGTGATAGATGGATTGGGTATGCTATATTTGGGCCAATTTGGGCTTTGGCTACTGGAGGGCTTTGGCTTCTTGTTCCACAGGCAAAGCAGCCGAAACTTTGGGGGGTGCCTTTGGTTCCATGGCTACCTTcgatatctatttttattaacatattccTTCTTGGATCTATAGATAAAGATTCGTTTATTAGGTTTGCTATCTGGACAGTGTTTCTCTTGGTTTACTATATCCTCTTCGGGTTACATGCTTCTTATGATACGGCTAAGGAGTCTGAGACACAAAGTAGTACGGAAAAGGAGTTGAACAAGTTGGAAGATGGAGTAGTGTCTTCTACGTAG 1773 0.4873 MGEEGGGIMRRRRGCTFQKNDFLPEESFKSWGNYTRALMDTPGRLKDRVLTRSDERVEVVEMRARSSHEMKKALNWWDLMWFGIGAVIGAGIFVLTGVEAREVAGPAVILSYVVSGISALLSVFCYTEFAVEIPVAGGSFAYLRVELGDFVAFIAAGNILLEYIVSCAAVARSWTSYFATLCNKNPNDFRIVVHDMNPNYGHLDPIAVLVLAIICILAVYSTKGSSVFNYIASVVHMVIIVFIIIVGLLHAKPQNYEPFAPFGARGVFQASAVLYFAYVGFDAVATMAEETKNPSRDIPIGLVGSMLITTAAYCSLAATLCLMQPYSAIDINAPFSAAFSAIGWDWAKYIVALGALKGMTTVLLVSAVGQARYLTHIARTHMMPPWFALVDEHTGTPVNATIAMVVASAVIAFFTDLQILSNLLSISTLFIFMFVAVALLVRRYYSSGVTTKGNQIKLIVFILLIIGSSCGISCYWALSDRWIGYAIFGPIWALATGGLWLLVPQAKQPKLWGVPLVPWLPSISIFINIFLLGSIDKDSFIRFAIWTVFLLVYYILFGLHASYDTAKESETQSSTEKELNKLEDGVVSST 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1708 590 Gene3D Amino acid/polyamine transporter I 68 503 - -
Ssu1g1708 590 PIRSF AA_transporter 50 511 - -
Ssu1g1708 590 PIRSF AA_transporter 458 584 - -
Ssu1g1708 590 PANTHER INNER MEMBRANE TRANSPORTER YGJI-RELATED 9 578 - -
Ssu1g1708 590 MobiDBLite consensus disorder prediction 571 590 - -
Ssu1g1708 590 PANTHER CATIONIC AMINO ACID TRANSPORTER-LIKE PROTEIN 9 578 - -
Ssu1g1708 590 Pfam C-terminus of AA_permease 512 562 IPR029485 -
Ssu1g1708 590 Pfam Amino acid permease 74 465 IPR002293 GO:0016020|GO:0022857|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1708 Ssu-Chr1 42135460 42139920 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1708 18 569 Organic Solute Cotransporters AT2G34960 59.747 0.0 679
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1708 K03294 - gmx:100785573 994.186
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g1708 1 42135460 42139920 Ssu1g1708 1 42135460 42139920 ECH