Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1707 ATGAACTTCAGGTTCCAGAACCTCTTGGGAGCCCCCTACCGCGGGGGCAACGCGGTCATTTCCAGCAACACCGTGCTACTCTCCCCCGTCGGTAACCGCGTGGCCGTCACGGACCTCCTCAAGTCCGAGACCTCCACCCTCCCCGTCCAGTCCTCCTCCAACGTCTCCCGTATCGCCGTCTCCCCCGACGCCACCTTCCTCCTCGCCGTCGACGACCGCAACCGCTGCCTCTTCGTCAACCTCCGCCGCCGCGCCCTCCTCCACCGCATCACCTTCAAGCACCGCGTCGCCGCCGTCGAGTTCAGCCCCGACGGGGCCCTCATCGCCGTCGCCGCCGGCAAGCTGGTCCAGATCTGGCGCTCGCCGGCCTTCCGCCGGGAGTACTTCCCCTTCGAGCTCGTCCGGACCTTTGCCGACTTCGACGCGAAAATCACCGCCCTCGATTGGAGCCCGGACTCGGACTACCTCATCGTTGGGTCCAAGGACCTAACCGCGAGAATCTTGTGCTTGAAGAAACTGAATGGCGGTGTTAAGAAAAGGCCTTTTTTGCTCTTAGGGCATAGAGATTCAGTTGTAGGTTCGTTCTTTGGGGTCAATTCGAAAACTAATAGGGTTTGTAAGGCCTATACTGTTACTAGGGATTGTTATTTGTTTAGCTGGGGTTTTAGTTTTGATGATGGTGAGGGGGAGGGTGAGGGTTCGGAGCCGCCATCACCGGGGACGCCGGAGAGGGATGTGGAGGGGAATTTGGAGGTTAGTGAGAGTGATGGtgtgaggaagaggaagaaaattgatGGTGAGGAGGGTTACTTGAGTAGAGGGAAGTGGGAGTTGTTGAGGAAGGATGGTTTTATGCAGGGTTCGGCGAAGGTGACCGCGTGTGATTATCATAGAGGGCTGGATATGGTGGTGGTTGGATTTTCTAATGGTGTGTTTGGCTTGTATCAGATGCCGGATTTCGTGTGCATTCACCTGTTGTCTATATCGAGGGAGAAGATTACCACTGCTGTTTTTAATGAGCTTGGGAACTGGTTGGCCTTTGGCTGCGCCAAATTGGGGCAGCTGCTGGTGTGGGAGTGGCGGTCCGAGAGCTACATTTTGAAGCAGCAGGGTCACTACTTTGACGTGAACTGCGTTGCTTATTCGCCGGATTCGCAGCTCCTTGCTACTGGAGCGGATGATAATAAAGTGAAGGTGTGGACTCTTTCCTCGGGATTTTGCTTTGTTACGTTTTCCGAGCACACTAATGCTGTTACGGCTCTACATTTTATGGCAAGTAACAATTGCCTGCTTAGTGCATCTCTTGATGGGACCATTCGTGCATGGGATTTATTACGTTACCGGAATTTTAGGACGTTTACAACCCCTTCTTCGAGGCAGTTTGTTTCTTTGACAGCTGATCAAAGTGGTGAAGTGATATGCGCTGGCACTTCAGATTCCTTTGAGATTTTTGTTTGGTCAATGAGAACGGGCCGCTTATTGGATGTGCTTAGTGGTCATGAAGCTCCTGTTCATGCGCTGATGTTTTCTCCTACAAatGCTGTCTTGGCTTCATCATCATATGACAAAACTGTTCGGTTGTGGGATGTCTTTGATGGAAAAGGCACAGTTGAAACGTTTCCTCACACACATGATGTTCTTACAGTAGTTTATCGTCCAGATGGAAGGCAGTTAGCTTGCTGCACATTGGATGGGCAAATTCATTTTTGGGACCCAATAGATGGTTTGCTGATGTACACCATAGAAGGTTCTAGAGATATTGCCGGTGGGCGTCTTATGACTGACCGTAGATCAGCTGCTAACTCAACTTCAGGGAAGTTCTTCACAGCCTTGTGTTATTCAGCTGATGGAAGCTACATATTAGCTGGGGGAAGTAGCAGATACATCTGCATGTATGATGTTGCAGATCAGGTTTTACTTCGACGTTTCCAGATAACTCACAATCTCTCATTAGATGGAGTGCTTGATATTTTAAACTCGAAGAATATGACAGAAGCTGGCCCCCTAGATTTGATTGATGATGACAACAGTGACATTGAAGAAGGTGTTGACAAACAAACACGAGGGAAACTAGGATTAGACTTACCAGGATCTATGCCTAACCGTGGAAGGCCAATTATTCAGACAAAATGCCTGAGAATTGCACCTACAGGGCGGAGTTTTGTTGCAGCAACAACTGTGGGAGTCATGGTTTATTCTGTTGATGAATCGTTCATATTTGATCCAACTGACCTAGACATAAATGTTACACCAGAGGCTGTTGATGAAGCTCTTAGTGAAAATCAACCTAGTAAAGCCTTGATCCTTAGTCTTCGCCTAAATGAGgattctttcattaaaaaatgtatatttgcGGTTAGTCCAGCAGTTATTCCAGCAGTTGCCACATCAATCCCTTACAAATATATCCAACGATTAGTTGAGGCACTTGCAGATCTTCTAGAAAATTGCCCGCATTTGGAATTTATACTTAGATGGTGTCAGGAGCTCTGCAAAGCCCATGGGAATTCTATTCAGCAGAACTCAAGAAATCTGTTGCCATCATTAAAATCTTTGCAGAAAGCAATCACTAGAATTCATCAGGATCTAGCAGATACATGCTCCTCCAATGAATATATGCTGCGATATTTATGTTCTTCTGGTGCCATGAAATGA 2655 0.4761 MNFRFQNLLGAPYRGGNAVISSNTVLLSPVGNRVAVTDLLKSETSTLPVQSSSNVSRIAVSPDATFLLAVDDRNRCLFVNLRRRALLHRITFKHRVAAVEFSPDGALIAVAAGKLVQIWRSPAFRREYFPFELVRTFADFDAKITALDWSPDSDYLIVGSKDLTARILCLKKLNGGVKKRPFLLLGHRDSVVGSFFGVNSKTNRVCKAYTVTRDCYLFSWGFSFDDGEGEGEGSEPPSPGTPERDVEGNLEVSESDGVRKRKKIDGEEGYLSRGKWELLRKDGFMQGSAKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLAFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCVAYSPDSQLLATGADDNKVKVWTLSSGFCFVTFSEHTNAVTALHFMASNNCLLSASLDGTIRAWDLLRYRNFRTFTTPSSRQFVSLTADQSGEVICAGTSDSFEIFVWSMRTGRLLDVLSGHEAPVHALMFSPTNAVLASSSYDKTVRLWDVFDGKGTVETFPHTHDVLTVVYRPDGRQLACCTLDGQIHFWDPIDGLLMYTIEGSRDIAGGRLMTDRRSAANSTSGKFFTALCYSADGSYILAGGSSRYICMYDVADQVLLRRFQITHNLSLDGVLDILNSKNMTEAGPLDLIDDDNSDIEEGVDKQTRGKLGLDLPGSMPNRGRPIIQTKCLRIAPTGRSFVAATTVGVMVYSVDESFIFDPTDLDINVTPEAVDEALSENQPSKALILSLRLNEDSFIKKCIFAVSPAVIPAVATSIPYKYIQRLVEALADLLENCPHLEFILRWCQELCKAHGNSIQQNSRNLLPSLKSLQKAITRIHQDLADTCSSNEYMLRYLCSSGAMK 884
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1707 884 MobiDBLite consensus disorder prediction 227 259 - -
Ssu1g1707 884 ProSitePatterns Trp-Asp (WD) repeats signature. 516 530 IPR019775 -
Ssu1g1707 884 ProSiteProfiles Trp-Asp (WD) repeats profile. 369 410 IPR001680 GO:0005515
Ssu1g1707 884 Pfam WD domain, G-beta repeat 370 400 IPR001680 GO:0005515
Ssu1g1707 884 Pfam WD domain, G-beta repeat 407 443 IPR001680 GO:0005515
Ssu1g1707 884 Pfam WD domain, G-beta repeat 134 167 IPR001680 GO:0005515
Ssu1g1707 884 Pfam WD domain, G-beta repeat 543 571 IPR001680 GO:0005515
Ssu1g1707 884 Pfam WD domain, G-beta repeat 492 529 IPR001680 GO:0005515
Ssu1g1707 884 ProSiteProfiles Trp-Asp (WD) repeats profile. 497 538 IPR001680 GO:0005515
Ssu1g1707 884 PANTHER WD40 REPEAT PROTEIN 1 881 IPR027145 -
Ssu1g1707 884 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 369 405 - -
Ssu1g1707 884 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 539 571 - -
Ssu1g1707 884 Gene3D - 21 229 IPR015943 GO:0005515
Ssu1g1707 884 SUPERFAMILY WD40 repeat-like 127 577 IPR036322 GO:0005515
Ssu1g1707 884 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 411 444 - -
Ssu1g1707 884 ProSitePatterns Trp-Asp (WD) repeats signature. 430 444 IPR019775 -
Ssu1g1707 884 SUPERFAMILY WD40 repeat-like 25 220 IPR036322 GO:0005515
Ssu1g1707 884 SMART WD40_4 83 120 IPR001680 GO:0005515
Ssu1g1707 884 SMART WD40_4 362 401 IPR001680 GO:0005515
Ssu1g1707 884 SMART WD40_4 404 443 IPR001680 GO:0005515
Ssu1g1707 884 SMART WD40_4 533 571 IPR001680 GO:0005515
Ssu1g1707 884 SMART WD40_4 319 359 IPR001680 GO:0005515
Ssu1g1707 884 SMART WD40_4 40 80 IPR001680 GO:0005515
Ssu1g1707 884 SMART WD40_4 446 487 IPR001680 GO:0005515
Ssu1g1707 884 SMART WD40_4 490 529 IPR001680 GO:0005515
Ssu1g1707 884 SMART WD40_4 130 169 IPR001680 GO:0005515
Ssu1g1707 884 SMART WD40_4 594 633 IPR001680 GO:0005515
Ssu1g1707 884 PRINTS G protein beta WD-40 repeat signature 516 530 IPR020472 -
Ssu1g1707 884 PRINTS G protein beta WD-40 repeat signature 430 444 IPR020472 -
Ssu1g1707 884 PRINTS G protein beta WD-40 repeat signature 388 402 IPR020472 -
Ssu1g1707 884 Gene3D - 277 480 IPR015943 GO:0005515
Ssu1g1707 884 ProSiteProfiles Trp-Asp (WD) repeats profile. 539 571 IPR001680 GO:0005515
Ssu1g1707 884 ProSiteProfiles Trp-Asp (WD) repeats profile. 411 452 IPR001680 GO:0005515
Ssu1g1707 884 CDD WD40 322 625 - -
Ssu1g1707 884 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 497 530 - -
Ssu1g1707 884 SUPERFAMILY YVTN repeat-like/Quinoprotein amine dehydrogenase 604 735 IPR011044 -
Ssu1g1707 884 Gene3D - 481 735 IPR015943 GO:0005515
Ssu1g1707 884 Pfam Dip2/Utp12 Family 774 879 IPR007148 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1707 468 644 Miscellaneous Gene Families AT5G08390 20.339 1.51e-08 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1707 K14558 - gmx:100526905 1649.03