Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1704 ATGAACATCTTCAAGAAGAAAACCTCACCCAAAGAAGCTCTGCGGACGAGTAAGAGGGAAATGGCTGTTGCAACCAGAGGAATTGAAAGAGAGATAGCATCGCTACAGATGGAGgaaaaaaaattggtggcAGAGATTAAAAGAGAAGCAAAAACGGGAAATGAGGCTGCAACCAGAATCTTAGCTCGTCAACTTGTTAGGTTACGTCAACAGATAACCAATTTGCAGGGAAGCCGTGCTCAGATCAGGGGTGTAGCAACTCACACACAGGCATTATATGCAAGCACTTCGATCTCTACAGGAATGAAGGGTGCAACTAAAGCAATGGTGGCAATGAATAAGCAAATGGCACCAGCAAAACAGGCTAAAGTGATCAAAGAATTCCAAAAGCAATCAGCACAATTGGACATGACGATTGAGATGATGTCAGAATCTATTGACGAAACTTTAGACAAAGATGAAGCTGAGGAAGAAACAGAAGAGCTCACTAACCAGGTTCTTGATGAGATTGGAGTGGATATTGCATCCCAGTTATCTTCTGCTCCAAAAGGTCGAATTGCTTCAAGGAATACTGAAAATGTTGCTCCAAGACCAGAGGCATCCCAAGATGTCGAAGATCTTGAAAAGAGATTGGCTTCTCTCCGAAGAATATAA 654 0.4159 MNIFKKKTSPKEALRTSKREMAVATRGIEREIASLQMEEKKLVAEIKREAKTGNEAATRILARQLVRLRQQITNLQGSRAQIRGVATHTQALYASTSISTGMKGATKAMVAMNKQMAPAKQAKVIKEFQKQSAQLDMTIEMMSESIDETLDKDEAEEETEELTNQVLDEIGVDIASQLSSAPKGRIASRNTENVAPRPEASQDVEDLEKRLASLRRI 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1704 217 MobiDBLite consensus disorder prediction 178 206 - -
Ssu1g1704 217 PANTHER BNAA08G30490D PROTEIN 2 217 - -
Ssu1g1704 217 PANTHER CHARGED MULTIVESICULAR BODY PROTEIN 2 217 IPR005024 GO:0007034
Ssu1g1704 217 Coils Coil 197 217 - -
Ssu1g1704 217 Gene3D - 4 181 - -
Ssu1g1704 217 Coils Coil 145 165 - -
Ssu1g1704 217 Pfam Snf7 18 185 IPR005024 GO:0007034
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1704 Ssu-Chr1 41920630 41930991 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1704 K12191 - gmx:100777179 374.015