Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1702 ATGGCCTCAGAAAATGGAGATAAAGTAGAGCTTGGTCTCAATCCAGTTCCCGAGACAAAGCCAAAGAAGGATTGGGTTCTTTTGTCCCTCAGAGTGGTTGCATTTTTGGCCACTGCATCTGCAACACTTGTGATGGCCTTCAACAAACAGACGAAACGCTTCGTAGTTGCCACCGTTGGTAGCACCCCAATAACAGCTACTATTGCAGCAAAGTTTAACCAAACTCCAGCTTTTGTGTTCTTTGTGATAGCCAATGGAAATGCCAGTCTGCATAACTTGGTGATGATAGCAATGGATGTATTAGGACCCCAGTATGATTACAAAGGACTCCGGCTTGCATTGGTTGCAATATTAGACATGATGACTATGGCACTGGCATCAGCTGGAGATGGTGCAGCAACATTCATGTCTGAATTGGGAAAACACGGTAATTCACATGCAAGGTGGGATAAGATTTGTGACAAATTTGGAACCTATTGCAACCGAGGTGGTGCGGCCCTTATTGCCTCTTTCATTGGCTTCATTCTGCTCCTGATTATTTCAGTGATGTCCATTATTAAGCTGCTCAAGCCAAATCGCATTAACCACGCTTCTTCATAA 600 0.4417 MASENGDKVELGLNPVPETKPKKDWVLLSLRVVAFLATASATLVMAFNKQTKRFVVATVGSTPITATIAAKFNQTPAFVFFVIANGNASLHNLVMIAMDVLGPQYDYKGLRLALVAILDMMTMALASAGDGAATFMSELGKHGNSHARWDKICDKFGTYCNRGGAALIASFIGFILLLIISVMSIIKLLKPNRINHASS 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1702 199 PANTHER NITRATE, FORMATE, IRON DEHYDROGENASE 18 193 - -
Ssu1g1702 199 TIGRFAM A_tha_TIGR01569: plant integral membrane protein TIGR01569 28 188 IPR006459 -
Ssu1g1702 199 Pfam Casparian strip membrane protein domain 22 176 IPR006702 -
Ssu1g1702 199 PANTHER CASP-LIKE PROTEIN 1B2 18 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1702 Ssu-Chr1 41771364 41772653 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1702 - - gmx:100792043 324.709
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g1702 1 41771364 41772653 Ssu1g1702 1 41771364 41772653 ECH