Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1683 ATGATAGAACAAGGGCACATATGCcacaaaattttctctctttggcTAAATCAAGATCCAACAGAAGAGATGGGGGGTGAGATTGTCTTTGGTGGTATTGACTACAGGCATTTTAGAGGTGACCACACATATGTTCCTCTTTCTCAAAAGGGTTATTGGCAGATTGATGTGGGAGATATTCTACTTGCAAAGAACTCAACAGGGTTATGTGAGGGTGGTTGTGCTGCAATTGTGGACTCAGGGACATCTTTAATTGCTGGTCCAACTAGTGTTGTGACTCAAATTAACCATGCCATTGGAGCAGAAGGATATGTTAGTTTTGAGTGCAAAAGCATTGTCCATACCTATGGAGATTCAATATGGGAATCCTTGATTTCTGGGTTAAATCCTGACATTATATGCAGTGACATTGGACTCTGctcaaataatgaattttatacaATGGATGATGTTATTGAAACAGTGGCGCATAATCAAAGTTGGAATGGATCAAGGGAGAGTCCCTTTTGTACGTTTTGCAATATGATTGTCCTTTGGATCCAAGTTGAGCTTAAGCAAAGCAATGTAAaggaaaaagtattaaaatatgtgGATGAGCTGTGTGAGAAGCTCCCAAATCCCCCTGGACAATCATTTATAAACTGCAATAGTATTGCAACTATGCCATGCATTACATTCACGATTGGAAACAAGTCCTTTCCCCTCTCTCCAGAACAGTATATCCTTCGAGTTGAAGAAGGCTGTTCAACTGTCTGCTATGGCGGTTTTGTTGCTATAGATGTGCCTCCGCCACAGGGTCCCCTCTGGgttcttggaaatattttctTGGGGGCGTATCATACAGTGTTTGACTATGGCAATCTCCGTATAGGATTTGCAGAAGCTGCATAG 891 0.3861 MIEQGHICHKIFSLWLNQDPTEEMGGEIVFGGIDYRHFRGDHTYVPLSQKGYWQIDVGDILLAKNSTGLCEGGCAAIVDSGTSLIAGPTSVVTQINHAIGAEGYVSFECKSIVHTYGDSIWESLISGLNPDIICSDIGLCSNNEFYTMDDVIETVAHNQSWNGSRESPFCTFCNMIVLWIQVELKQSNVKEKVLKYVDELCEKLPNPPGQSFINCNSIATMPCITFTIGNKSFPLSPEQYILRVEEGCSTVCYGGFVAIDVPPPQGPLWVLGNIFLGAYHTVFDYGNLRIGFAEAA 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1683 296 Pfam Saposin-like type B, region 1 168 205 IPR007856 GO:0006629
Ssu1g1683 296 Pfam Eukaryotic aspartyl protease 1 295 IPR033121 -
Ssu1g1683 296 Pfam Saposin-like type B, region 2 108 140 IPR008138 -
Ssu1g1683 296 PRINTS Pepsin (A1) aspartic protease family signature 269 284 IPR001461 GO:0004190|GO:0006508
Ssu1g1683 296 PRINTS Pepsin (A1) aspartic protease family signature 76 87 IPR001461 GO:0004190|GO:0006508
Ssu1g1683 296 PRINTS Pepsin (A1) aspartic protease family signature 26 39 IPR001461 GO:0004190|GO:0006508
Ssu1g1683 296 SUPERFAMILY Acid proteases 1 295 IPR021109 -
Ssu1g1683 296 Gene3D - 104 205 - -
Ssu1g1683 296 PANTHER BETA-SITE APP-CLEAVING ENZYME, ISOFORM A-RELATED 1 296 IPR001461 GO:0004190|GO:0006508
Ssu1g1683 296 Gene3D Acid Proteases 33 296 IPR021109 -
Ssu1g1683 296 ProSiteProfiles Saposin B type domain profile. 166 207 IPR008139 -
Ssu1g1683 296 ProSiteProfiles Peptidase family A1 domain profile. 1 293 IPR033121 -
Ssu1g1683 296 SUPERFAMILY Saposin 106 205 IPR011001 -
Ssu1g1683 296 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 76 87 IPR001969 GO:0004190|GO:0006508
Ssu1g1683 296 PANTHER FUNGAL PROTEINASE A, ASPARTIC PROTEINASE SUPERFAMILY PROTEIN 1 296 - -
Ssu1g1683 296 ProSiteProfiles Saposin B type domain profile. 104 144 IPR008139 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1683 Ssu-Chr1 41029746 41031858 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1683 K08245 - gmx:100500551 568.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g1683 1 41029746 41031858 Ssu1g1683 1 41029746 41031858 ECH