Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1680 ATGGAAGAAGTTAACGTGGTTCAGACCAAGGATGGAACTGTTTCAGTAGCTTCTGCGTTTGCCGGCCATCAAGAAGCTATACAGCATAGAGACCACAAATTTTTAAGAATCGTTGTTGAAGAAGCGTATAAAGCGGTAGACTGTGAAGATGGGGGTCCTTTTGGTGCTATTATAGTTTGTAATGATGAAGTAGTTGCTAGTTGTCACAACATGGTTCTGAGGAACACAGACCCAACTGCTCATGCAGAAGTGACTGCTATTAGAAAGGCATGTGAAAAGCTAAACCGGATAGAACTTTCAGACTATGAAATGTATACTTCTTGCGAACCTTGTCCAATGTGCTTTGGAGCAATCCACCTCTCACGAGTTAAGaggTTGGTTTATGGAGCAAAGGCAGAGGCAGCAATTGCTATTGGGTTCGATAACTTCATTTCAGATGCACTGCGAGGTACTGGATTCTATCAGAAAGCACAATTGGAGATTAAAAGGGCTGACGGCAAAGAGGCTAACATTGCTGAAGAagtttttgagaaaacaaaggaaaaattcCGAATGTTTTGA 561 0.4011 MEEVNVVQTKDGTVSVASAFAGHQEAIQHRDHKFLRIVVEEAYKAVDCEDGGPFGAIIVCNDEVVASCHNMVLRNTDPTAHAEVTAIRKACEKLNRIELSDYEMYTSCEPCPMCFGAIHLSRVKRLVYGAKAEAAIAIGFDNFISDALRGTGFYQKAQLEIKRADGKEANIAEEVFEKTKEKFRMF 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1680 186 ProSiteProfiles Cytidine and deoxycytidylate deaminases domain profile. 29 141 IPR002125 -
Ssu1g1680 186 ProSitePatterns Cytidine and deoxycytidylate deaminases zinc-binding region signature. 81 118 IPR016192 GO:0008270|GO:0016787
Ssu1g1680 186 Gene3D Cytidine Deaminase, domain 2 29 185 - -
Ssu1g1680 186 SUPERFAMILY Cytidine deaminase-like 24 144 IPR016193 GO:0003824
Ssu1g1680 186 PANTHER CYTIDINE/DEOXYCYTIDYLATE DEAMINASE FAMILY PROTEIN-RELATED 1 185 - -
Ssu1g1680 186 PANTHER CYTOSINE DEAMINASE FAMILY MEMBER 1 185 - -
Ssu1g1680 186 CDD nucleoside_deaminase 35 141 - -
Ssu1g1680 186 Pfam Cytidine and deoxycytidylate deaminase zinc-binding region 30 129 IPR002125 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1680 Ssu-Chr1 40892636 40896599 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1680 - - gmx:100527067 350.517
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0513 6 7916614 7919313 Ssu1g1680 1 40892636 40896599 PCT