Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1673 ATGTTAGCTTCTTCGCTCTCCTTCCTTCACTCTTGCGCACccccctcttcctcttccttatTCACAATTTCGCCGCCAAACCCCAAACCCTCTCTCTCGTTACCTTTCGTGGTTGAAGCCAAATCCAGGACCCGCGGGGAAGACAGGACCGCTCGCCACACTCGCGTCAGAAAGAAGGTTGAAGGGACACCGGAGAGACCGAGGTTGTCAGTGTTCCGATCCAACAAGCATCTCTCTGTCCAGGTGATAGATGACACCAACATGCACACGCTTGCTTCGGCTTCGACGATGCAGAAGACGATTGCCGAAGAGTTCAACTACACCTCTGGCCCTACGGTTGAAGTAGCAAAGAGGATGGGTGAGATCATTGCAAAATCCTGTTTGGAGAAGGGGATCACAAAAGTGGCCTTTGATCGAGGTGGATACCTATACCATGGCCGTGTCCAAGCACTTGCTGAAGCAGCTCGTGAACATGGCCTAGATTTCTGA 489 0.499 MLASSLSFLHSCAPPSSSSLFTISPPNPKPSLSLPFVVEAKSRTRGEDRTARHTRVRKKVEGTPERPRLSVFRSNKHLSVQVIDDTNMHTLASASTMQKTIAEEFNYTSGPTVEVAKRMGEIIAKSCLEKGITKVAFDRGGYLYHGRVQALAEAAREHGLDF 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1673 162 SUPERFAMILY Translational machinery components 47 160 - -
Ssu1g1673 162 Gene3D - 44 162 - -
Ssu1g1673 162 CDD Ribosomal_L18_L5e 57 160 - -
Ssu1g1673 162 Pfam Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast 44 162 IPR005484 GO:0003735|GO:0005840|GO:0006412
Ssu1g1673 162 PANTHER 39S RIBOSOMAL PROTEIN L18, MITOCHONDRIAL 11 162 IPR005484 GO:0003735|GO:0005840|GO:0006412
Ssu1g1673 162 PANTHER 39S RIBOSOMAL PROTEIN L18, MITOCHONDRIAL 11 162 - -
Ssu1g1673 162 TIGRFAM L18_bact: ribosomal protein uL18 47 162 IPR004389 GO:0003735|GO:0005840|GO:0006412
Ssu1g1673 162 Hamap 50S ribosomal protein L18 [rplR]. 44 162 IPR004389 GO:0003735|GO:0005840|GO:0006412
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1673 K02881 - gmx:100778569 281.952
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g1673 1 40648615 40650946 Ssu1g1673 1 40648615 40650946 ECH