Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1656 ATGGCTGCTTCAGAGGAGAATAGTGCACTGTTCCCAATATTCATTTTGACAATAATGGCCATTCCTATAGTGCCATATACAATAACAAAGTTGTGTCGTGCTGCCTCTAAGAAATCAAAGagcatacactgtcagtgctcTGATTGCTCGCGGTCAGGGAAGTACCATAAATCAATATTCAAGAGGATTTCGAATGTCTCAACATGTAGTAACTTGACATTGTTACTGCTTTGGGTGGTTATGATTATTCTGGTTTATTACATAAAGACCATGAGTCGAGAGATTGAAATTTTTGATCCATTTAATATTCTAGGATTAGAGCCTGGAGCGCCAGAGtctgaaataaagaaaaagtatagGAGACTTTCTGTTCAATACCATCCAGATAAAAATCCAGATCCAGaGGCACACAAGTACTTTGTTGAGTACATTGCCAAGGCTTATCAAGCTCTTACAGATCCAATAGCTcgtgaaaattatgaaaaatatggCCATCCTGATGGCAGGCAgGGATTTCAAATGGGTATAGCTCTCCCTCAATTCCTGCTTAATATTGATGGGGCATCTGGTGGAATACTTCTGCTTTGGATTGTTGGTGTGTGTATTCTCTTGCCATTGGTAGTTGCTGTTGTTTATCTCTCCAGATCGTCAAAGTACACTGGCAACTATGTGATGCATCAAACACTTTCCACTTACTATTACCTCATGAAGCCTTCTTTGGCCCccagCAAAGTCATGGATGTCTTCATCAAGGCTGCTGAATATATGGAAATTCCAGTTCGTAGGACTGATGATGAACCTCTTCAGAAGCTTTTTATGTTGGTAAGGAGTGAGTTGAATCTTGACCTCAAGAACATCAAGCAGGAGCAGGCTAAATTTTGGAAGCAGCATCCTGCACTGGTTAAGACAGAGCTGTTAGTTCAAGCTCAGTTGACCCGCGAATTTGCGGCCTTGTCTCCATCTTTACAAAGTGATTTCAGACGAATTTTAGAAACAGCACCCCGCCTTCTTGAAGAATTAATGAAGATGGCAGTTATACCACGGAATGCTCAGGGGCATGGATGGCTGAGGCCTGCAATTGGTGTTGTTGAGCTTTCTCAGTGTATCATCCAGGCTGTTCCTCTCAGTGCTAGAAAGACTACTGGTGGATCACCAGAAGGCATTGCACCATTTCTGCAGTTGCCACATATTAGTGAGACTATTATTAAGAAGGTGGCCCGCAAGAAGGTGAGAACATTTCAGGAACTTCATGACATGGATTCTCAGGAGCGAGCTGACCTGCTTATTCAAACAGGTGGGTTATCTTCTGCTGAGGTGCAAGACATTGAGATGGTACTGGACATGATGCCTTCCTTGACACTTGAGGTAACTTGTGAGACTGAAGGTGAAGAGGGTATACAAGAGGGTGACATTGTGACTATCCATGCTTGGATAAATGTTAAAAGGGGTAATGGCCTGATTGGTGCTCTTCCACATGCCCCCTACTACCCATTTCAGAAGGAAGAAAATTACTGGTTTTTGCTTGCGGATTCTGTTTCAAATAATGTGTGGTTTTCTCAGAAGGTTAGTTTCATGGATGAAACTGCTGCTGTAACTGCTGCATCTAAGGCAATTGAGGAATCTATGGAGGGGTCAGGATCAAATGTGAAGGAGACCAGTAGGGCAGTTGCAGAAGCAGTTGAGAAGGTAAAAGGGGGCTCTAGATTGGTATTGGGCAAGTTGCAGGCCCCGTCAGAGGGTAACTACAGTTTGACTTGCTATTGCTTGTGTGATTCTTGGTTGGGCTGTGACAGAAGGACaaatttaaagctcaaaattttgaaacgAACTCGGGCTGGCACCAGGGGTGCTGCTTTGGCTGATGAAGGACCTATCATGGAGGATGGAGTTGAGGAGGATGAGGACAATGAGGATGAAGAGTATGATGATGACTACGAGAGTGAGTATAGtgaagatgaagaagatgatcaaaacacaaaaaataagcaTCAAGCTGCCAATGGCTCCGTGAATAAACACGGTCAAGCTGCAGAAAGTTCAGGCTCTGATGAAGAATGA 2058 0.4111 MAASEENSALFPIFILTIMAIPIVPYTITKLCRAASKKSKSIHCQCSDCSRSGKYHKSIFKRISNVSTCSNLTLLLLWVVMIILVYYIKTMSREIEIFDPFNILGLEPGAPESEIKKKYRRLSVQYHPDKNPDPEAHKYFVEYIAKAYQALTDPIARENYEKYGHPDGRQGFQMGIALPQFLLNIDGASGGILLLWIVGVCILLPLVVAVVYLSRSSKYTGNYVMHQTLSTYYYLMKPSLAPSKVMDVFIKAAEYMEIPVRRTDDEPLQKLFMLVRSELNLDLKNIKQEQAKFWKQHPALVKTELLVQAQLTREFAALSPSLQSDFRRILETAPRLLEELMKMAVIPRNAQGHGWLRPAIGVVELSQCIIQAVPLSARKTTGGSPEGIAPFLQLPHISETIIKKVARKKVRTFQELHDMDSQERADLLIQTGGLSSAEVQDIEMVLDMMPSLTLEVTCETEGEEGIQEGDIVTIHAWINVKRGNGLIGALPHAPYYPFQKEENYWFLLADSVSNNVWFSQKVSFMDETAAVTAASKAIEESMEGSGSNVKETSRAVAEAVEKVKGGSRLVLGKLQAPSEGNYSLTCYCLCDSWLGCDRRTNLKLKILKRTRAGTRGAALADEGPIMEDGVEEDEDNEDEEYDDDYESEYSEDEEDDQNTKNKHQAANGSVNKHGQAAESSGSDEE 685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1656 685 Pfam Sec63 Brl domain 222 602 IPR004179 -
Ssu1g1656 685 MobiDBLite consensus disorder prediction 618 685 - -
Ssu1g1656 685 SMART Sec63_2 209 604 IPR004179 -
Ssu1g1656 685 MobiDBLite consensus disorder prediction 625 654 - -
Ssu1g1656 685 MobiDBLite consensus disorder prediction 662 677 - -
Ssu1g1656 685 Pfam DnaJ domain 99 161 IPR001623 -
Ssu1g1656 685 SUPERFAMILY Chaperone J-domain 95 192 IPR036869 -
Ssu1g1656 685 Gene3D C2 domain 453 613 IPR035892 -
Ssu1g1656 685 Gene3D - 389 448 - -
Ssu1g1656 685 ProSiteProfiles dnaJ domain profile. 99 164 IPR001623 -
Ssu1g1656 685 Gene3D - 225 373 - -
Ssu1g1656 685 Gene3D DnaJ domain 98 182 IPR036869 -
Ssu1g1656 685 PANTHER DNAJ PROTEIN ERDJ2-LIKE 1 678 - -
Ssu1g1656 685 SMART dnaj_3 98 156 IPR001623 -
Ssu1g1656 685 SUPERFAMILY Sec63 N-terminal domain-like 244 450 - -
Ssu1g1656 685 PRINTS DnaJ domain signature 119 134 IPR001623 -
Ssu1g1656 685 PRINTS DnaJ domain signature 156 175 IPR001623 -
Ssu1g1656 685 PRINTS DnaJ domain signature 136 156 IPR001623 -
Ssu1g1656 685 PRINTS DnaJ domain signature 101 119 IPR001623 -
Ssu1g1656 685 CDD DnaJ 99 153 IPR001623 -
Ssu1g1656 685 PANTHER SEC63 DOMAIN-CONTAINING 1 678 - -
Ssu1g1656 685 SUPERFAMILY E set domains 454 608 IPR014756 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1656 Ssu-Chr1 39742468 39748969 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1656 K09540 - gmx:100809969 1252.27