Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1636 ATGAGAACGTCGTCGTTTGGGAGGTGCGGCGCCGGCGAGTTCGACCTGCAGGAAAGCTTCGGCACCTCGTCGCCGGCTGCCGGAGGACACGCCTACGGCTCCATGTTGCCGGTGTTCCTCAACGACCTCCGCAGCAACCACCACAAGGAGCTCGTGGAGATCACGCTGGAGCTCGAAAACGACGCCGTCGTGCTCTGCAACCTGGCGCCGGCGCCGTCTTCCGCTCCCAACGCTTCGCCGTCGTCGACTGCCTCCGGCGGCGGCGCCGTCGCGAGGAGCCTCTCGATCGCGTCGAGGATTCGGAGGAAGTTCCCGTGGCTGCGGTCGATGTCGTCGGCGTCGTCGGAGAGCGGCGCCGCCGCCGTCGCGGAAGATCCGGCGGTGGCCGCGCGAAACGAGCGGAAAATGAGAGCGAAGCTTGAACGGACGAGGTCCAGCGCGCAGAGAGCGCTGAAAGGTTTGAGATTCATCAGCAAGTCCGGCCAGGCCACCGACGAGCTGAGGCGGAAGGTGGACGAAAGGTTCAGCTTGTTGGCCAAGGATGGCTTACTCTCTCGAGAAGACTTTGGTGAATGCATAGGTGAGGAAAATGGGATGGAGGATTCGAAGGAATTTGCAGTGTGTATATTCGACGCATTGGCTCGAaggaaagagaataaaataagtggCATAAACAGAGAGGAGTTGCATGAGTTCTGGTTGCAAATTTCAGACCAGAGCTTTGATGCTCGGCTTCAGATTTTCTTTGACATgGCAGATAGCAATGAAGACGGAAGAATTACTAGGGAGGAAGTACAAGAGCTCATAATGCTCAGTGCTTCTGCAAACAAGCTATCGAAGCTAAAGGAACAAGCTGAAGGATACGCTGCGTTAATAATGGAAGAATTAGATCCAGAAAACCTGGGTTATATCGAGCTGTGGCAGCTAGAAATGTTGTTACTAGAAAAGGATAGGTACATGAACTACAGCAGGCAACTCAGCACCGCAAGTGTAAACTGGAGTCAAAATATGACCGATATGAGGCCTAGAAATGAGATCCAAAGATTCTGTAGGACACTCCAATGTCTTGCATTAGAGTATTGGAGAAGGGGCTGGattttgttattgtggttgGTTACCACTGCTTGCCTATTTACCTGGAAATTTTACCAGTATAAAAACAGATCAACTTTCCAAGTCATGAGCTACTGCATACCAATAGCCAAGGGTGCTGCAGAGACACTGAAGCTCAACATGGCTCTCATCCTCTTGCCAGTTTGTCGAAACACATTGACATGGCTTCGTTCTACAGGAGCCAGGAAATTTGTCCCTTTTGATGACAACATTAGTTTCCACAAGATGATTGCATTTGCCATAGTTGTTGGAATCGCCGTTCATGCAGGCAATCATCTGGCGTGTGATTTCCCCCTTCTCGTAAACTCATCTCCAGAAAAATTTTCACTCATATCTTCAGATTTCAATAACAAAAAACCCACATACAAAACCCTTCTGACTGGTGTTGAAGGCGTAACTGGAATCTCAATGGTTATTTTGATGGCAATCTCTTTCACTTTAGCAACTCACCACTTCCGGAGAAACGCTGTCAGGCTTCCTTCACCCTTTAACAGATTGACAGGCTTTAATGCATTTTGGTACTCACACCACCTTTTTGGTCTGGTCTATGTTCTGCTCCTCATCCATGGATCATTCTTGTACTTAACCCATCGGTGGTACCAGAAAACGACATGGATGTATATCTCTGCTCCACTGTTGCTGTACATGGCAGAGCGTAGTCTACGCACTCGTAGATCAGCACATTATACAGTAAAAATTCTGAAGGTCTCTGGGCTACCAGGAAATGTCTTCAGCTTAATCATGTCCAAGCCTAACGGATTTAAGTACAAAAGTGGACAGTACATATTTTTACAGTGCCCAAAAATCTCCCCCTTTGAGTGGCACCCATTCTCCATTACCTCAGCCCCAGGAGATGAATACCTAAGTGTTCACATTCGCACAGTGGGAGACTGGACCCAAGAACTTAAGCTTCTCCTCACAGAAGAAGATGACATATTACCTTCGGTTAATTGTCGTGCAACGTTTGGTGAACTAATGCAATTGGATCAAAGAGGACAGCCGAGACTGCTTGTTGATGGCCCTTACGGAGCTCCAGCACAAGACTACCAGAATTTTGATGTGTTGCTTCTCATAGGATTAGGAATTGGAGCAACTCCTTTCATTAGCATTCTCAGAGATCTTCTCAATAACACCAGAACAATGGATGAACTAGTGGTGCAGGAGTCAAACACAGAAACAAGTCAAACAACCAGATCAGACGAGAGCTCCaatagttttacatcttcaaatTTAACTCCAGGAGGAAATAAGAGATCACGAAGGACTACAAATGCTTATTTCTACTGGGTCACTAGGGAACCTGGATCTTTTGAATGGTTTAAAGGAGTAATGGACGAAGTTGCAGAAATGGACCACAAAGTAATATATGATGTTCACAAATAA 2496 0.4679 MRTSSFGRCGAGEFDLQESFGTSSPAAGGHAYGSMLPVFLNDLRSNHHKELVEITLELENDAVVLCNLAPAPSSAPNASPSSTASGGGAVARSLSIASRIRRKFPWLRSMSSASSESGAAAVAEDPAVAARNERKMRAKLERTRSSAQRALKGLRFISKSGQATDELRRKVDERFSLLAKDGLLSREDFGECIGEENGMEDSKEFAVCIFDALARRKENKISGINREELHEFWLQISDQSFDARLQIFFDMADSNEDGRITREEVQELIMLSASANKLSKLKEQAEGYAALIMEELDPENLGYIELWQLEMLLLEKDRYMNYSRQLSTASVNWSQNMTDMRPRNEIQRFCRTLQCLALEYWRRGWILLLWLVTTACLFTWKFYQYKNRSTFQVMSYCIPIAKGAAETLKLNMALILLPVCRNTLTWLRSTGARKFVPFDDNISFHKMIAFAIVVGIAVHAGNHLACDFPLLVNSSPEKFSLISSDFNNKKPTYKTLLTGVEGVTGISMVILMAISFTLATHHFRRNAVRLPSPFNRLTGFNAFWYSHHLFGLVYVLLLIHGSFLYLTHRWYQKTTWMYISAPLLLYMAERSLRTRRSAHYTVKILKVSGLPGNVFSLIMSKPNGFKYKSGQYIFLQCPKISPFEWHPFSITSAPGDEYLSVHIRTVGDWTQELKLLLTEEDDILPSVNCRATFGELMQLDQRGQPRLLVDGPYGAPAQDYQNFDVLLLIGLGIGATPFISILRDLLNNTRTMDELVVQESNTETSQTTRSDESSNSFTSSNLTPGGNKRSRRTTNAYFYWVTREPGSFEWFKGVMDEVAEMDHKVIYDVHK 831
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1636 831 CDD NOX_Duox_like_FAD_NADP 604 830 - -
Ssu1g1636 831 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 597 719 IPR017927 GO:0016491
Ssu1g1636 831 Pfam Respiratory burst NADPH oxidase 139 243 IPR013623 GO:0004601|GO:0050664
Ssu1g1636 831 Coils Coil 130 150 - -
Ssu1g1636 831 Gene3D - 140 261 - -
Ssu1g1636 831 Pfam Ferric reductase NAD binding domain 723 824 IPR013121 GO:0016491
Ssu1g1636 831 ProSitePatterns EF-hand calcium-binding domain. 253 265 IPR018247 -
Ssu1g1636 831 SFLD NADPH oxidase subgroup (NOX) 134 830 - -
Ssu1g1636 831 CDD EFh 224 270 IPR002048 GO:0005509
Ssu1g1636 831 ProSiteProfiles EF-hand calcium-binding domain profile. 240 275 IPR002048 GO:0005509
Ssu1g1636 831 Pfam FAD-binding domain 601 716 IPR013112 GO:0016491
Ssu1g1636 831 MobiDBLite consensus disorder prediction 758 789 - -
Ssu1g1636 831 PANTHER NADPH OXIDASE 40 829 - -
Ssu1g1636 831 PANTHER RESPIRATORY BURST OXIDASE HOMOLOG PROTEIN E 40 829 - -
Ssu1g1636 831 SUPERFAMILY Riboflavin synthase domain-like 600 716 IPR017938 -
Ssu1g1636 831 Pfam Ferric reductase like transmembrane component 403 558 IPR013130 -
Ssu1g1636 831 Gene3D Translation factors 586 686 - -
Ssu1g1636 831 Gene3D - 714 831 IPR039261 -
Ssu1g1636 831 PRINTS Cytochrome B-245 heavy chain signature 448 466 IPR000778 GO:0016020|GO:0016491
Ssu1g1636 831 PRINTS Cytochrome B-245 heavy chain signature 705 718 IPR000778 GO:0016020|GO:0016491
Ssu1g1636 831 PRINTS Cytochrome B-245 heavy chain signature 540 560 IPR000778 GO:0016020|GO:0016491
Ssu1g1636 831 PRINTS Cytochrome B-245 heavy chain signature 728 745 IPR000778 GO:0016020|GO:0016491
Ssu1g1636 831 SUPERFAMILY EF-hand 154 325 IPR011992 -
Ssu1g1636 831 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 706 820 IPR039261 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1636 Ssu-Chr1 39322807 39330720 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1636 23 830 Miscellaneous Gene Families AT1G19230 59.670 0.0 978
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1636 K13447 - gmx:100805697 1475.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g1636 1 39322807 39330720 Ssu1g1636 1 39322807 39330720 ECH