Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1608 ATGCAGAAGAATTCGGCATTGCCACTGAGCGACGCGAATGCGAACAAGAAGAGGAAGGCATTGTGCAGCAAGGAAACGCTGGTGAAGCTTCTAAGATGGCATTTTGGGTACCCTGATTTTAGGGGCATGCAGTTGGACGCTATTCAGGCCGTGCTCTCAGGGAAAGATTGTTTTTGTCTTATGCCAACTGGAGGAGGCAAGTCGATGTGTTATCAGATCCCTGCATTGGCGAAAACAGGAATTGTGCTTGTTGTTTGTCCTTTAATAGCCTTAATGGAAAACCAAGTAATGGCACTAAAGGAGAAAGGAATTGCGGCGGAATTTCTCTCCTCCACGAAAACGACGGATGCGAAAGTAAAGattCATGAGGACCTTGATTCTGGAAAACCTTCTATAAGGCTGCTATATGTGACTCCAGAGTTGATAGCAACACCAGGGTTTATGTCGAAGCTGACAAAGATTTATGCCAGGGGGTTGCTAAATCTCATTGCCATAGATGAGGCACATTGCATTTCAAGTTGGGGTCATGATTTCAGACCTAGCTACCGTAAGCTTTCATCTTTGAGAAGCCACCTACCAGATGTACCAATATTAGCTTTGACTGCTACTGCTGTGCCTAAGGTTCAGAAGGATGTAGTTGAATCCTTGCACATGCAAAATCCATTAATACTCAAGTCTTCCTTTAATCgtcctaatatatattatgaagTTAGGTACAAAGATCTGTTGGATGATGCCTATGCTGATTTATCTAATACTCTCAAATCTCTGGGAGACGTCTGTGCAATAGTGTACTGCCTTGAACGTTCAATGTGTGATGACTTGTCAGCTAATCTATCCCAAAGTGGAATTTCATGTGCTGCTTATCATGCAggattgaataataaaatgCGAACTTCAGTGTTAGATGATTGGATTTCTTCTAAGATAAAAGTTGTTGTTGCCACTGTTGCTTTTGGCTGTGCTGTTGCATATAGTTACTAA 984 0.4116 MQKNSALPLSDANANKKRKALCSKETLVKLLRWHFGYPDFRGMQLDAIQAVLSGKDCFCLMPTGGGKSMCYQIPALAKTGIVLVVCPLIALMENQVMALKEKGIAAEFLSSTKTTDAKVKIHEDLDSGKPSIRLLYVTPELIATPGFMSKLTKIYARGLLNLIAIDEAHCISSWGHDFRPSYRKLSSLRSHLPDVPILALTATAVPKVQKDVVESLHMQNPLILKSSFNRPNIYYEVRYKDLLDDAYADLSNTLKSLGDVCAIVYCLERSMCDDLSANLSQSGISCAAYHAGLNNKMRTSVLDDWISSKIKVVVATVAFGCAVAYSY 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1608 327 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 152 320 IPR027417 -
Ssu1g1608 327 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 253 327 IPR001650 -
Ssu1g1608 327 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 48 222 IPR014001 -
Ssu1g1608 327 SMART ultradead3 36 238 IPR014001 -
Ssu1g1608 327 PANTHER DNA HELICASE RECQ FAMILY MEMBER 5 321 - -
Ssu1g1608 327 TIGRFAM recQ_fam: ATP-dependent DNA helicase, RecQ family 30 322 IPR004589 GO:0004386|GO:0006310
Ssu1g1608 327 CDD DEXHc_RecQ 29 229 - -
Ssu1g1608 327 Gene3D - 230 323 IPR027417 -
Ssu1g1608 327 Pfam DEAD/DEAH box helicase 43 209 IPR011545 GO:0003676|GO:0005524
Ssu1g1608 327 PANTHER ATP-DEPENDENT DNA HELICASE Q-LIKE 3 5 321 - -
Ssu1g1608 327 Gene3D - 2 229 IPR027417 -
Ssu1g1608 327 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 23 223 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1608 Ssu-Chr1 38184031 38195011 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1608 - K10901 gmx:100819601 594.349