Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1604 ATGGGTTCCGATAACGAGAGCTTGGAGTTTCTGAAGGAGATCGGTTTGGGTTCCTCCAACATTGGCTGTTACATTAATGGCCACTGGAAAGCCACCGGTTCTTCTGTCACTTCTCTTAATCCTTCCAACAATCAGGCTATAGCTGAAGTGACTGAAGCAACTTTGCAAGATTATGAGGAGGGATTGCAAGCTTGCAGTGAAGCAGCCAAGACATGGATGACTATTCCAGCACCAAAAAGAGGTGAGATTGTGAGACAGATTGGTGAAGCGTTGAGGGCCAAATTGGATCCTCTGGGTAGGCTGGTGTCTCTTGAGATGGGAAAAATTGTTCCAGAAGGAATTGGGGAGGTTCAGGAAATTATTGATATGTGTGATTATGCTGTTGGGCTAAGCCGACAGTTGAATGGATCAATTATACCATCAGAACGTCCAGATCATATGATGTTTGAGGTATGGAACCCACTAGGAATAGTTGGTGTAATCACTGCTTTCAACTTTCCATGCGCTGTTCTAGGATGGAATGCTTGCATTGCATTAGTCTGTGGTAACTGTGTTGTGTGGAAGGGTGCTCCAACAACTCCTTTGATAACTATTGCTGTGACAAAGCTAGTAGCTGAAGTTCTTGAGAGGAACAAATTACCTGGTGCAATATTCACCTCATTCTGTGGAGGTGCTGAAATTGGTCAGGCAATATCAAAAGACACACGCATTCCCCTGGTTTCGTTTACTGGAAGTTCAAAGGTGGGCTTGATGGTCCAGCAAACAGTTAATGAGAGATTTGGCAAATGCTTGCTTGAGTTAAGCGGTAACAATGCGATAATAGTCATGGATGATGCAGACATCAAATTGGCTGTACGCTCCATTTTGTTTGCAGCTGTGGGTACTACTGGTCAGCGGTGTACAACTTGCCGTAGACTGTTTCTGCATGAGAGTATTTATACAAATGTACTGGACCAACTTACTGGAGTCTACAAACAAGTCAAAATTGGAAACCCCTTGGAGACGGGGACTCTAGTTGGACCTTGCATACTCGTACTTCTGTGGAAAACTTTCAGAAGGGTATTTCAGTCATAA 1074 0.4395 MGSDNESLEFLKEIGLGSSNIGCYINGHWKATGSSVTSLNPSNNQAIAEVTEATLQDYEEGLQACSEAAKTWMTIPAPKRGEIVRQIGEALRAKLDPLGRLVSLEMGKIVPEGIGEVQEIIDMCDYAVGLSRQLNGSIIPSERPDHMMFEVWNPLGIVGVITAFNFPCAVLGWNACIALVCGNCVVWKGAPTTPLITIAVTKLVAEVLERNKLPGAIFTSFCGGAEIGQAISKDTRIPLVSFTGSSKVGLMVQQTVNERFGKCLLELSGNNAIIVMDDADIKLAVRSILFAAVGTTGQRCTTCRRLFLHESIYTNVLDQLTGVYKQVKIGNPLETGTLVGPCILVLLWKTFRRVFQS 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1604 357 SUPERFAMILY ALDH-like 20 343 IPR016161 GO:0016491
Ssu1g1604 357 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 35 270 IPR016162 GO:0016491
Ssu1g1604 357 Pfam Aldehyde dehydrogenase family 33 343 IPR015590 GO:0016491
Ssu1g1604 357 PANTHER ALPHA-AMINOADIPIC SEMIALDEHYDE DEHYDROGENASE 20 343 - -
Ssu1g1604 357 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 265 272 IPR029510 GO:0016491
Ssu1g1604 357 PANTHER ALPHA-AMINOADIPIC SEMIALDEHYDE DEHYDROGENASE 20 343 IPR044638 GO:0004029
Ssu1g1604 357 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 271 343 IPR016163 GO:0016620
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1604 Ssu-Chr1 38144497 38148999 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1604 1 353 Acyl Lipid Metabolism Gene Families AT1G54100 77.337 0.0 570
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1604 K14085 - gmx:100811186 648.277