Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1588 ATGAAGATGATTCTAACCATCTTCTTCATCTCATCCCTCCTCTCCCTCTCCCATGCTTCTGTTGTAGATTTCTGTGTAGCAGATTACACAGCTCCCAATGGCCCTGCAGGATACTCTTGCAAGAAGCCTGCAAAGGTCACTGTGGATGACTTTGTCTACCATGGCCTTGGCACTGCTGGCAACACCTCAAACATCATCAAAGCCGCAGTGACCCCAGCATTTGATGCCCAATTCCCCGGTGTCAACGGCCTTGGCATTTCCGTTGCGCGTTTGGACCTGGCACCTGGTGGAGTTATCCCACTCCACACACACCCTGGAGCCTCAGAATTGTTGGTTGTTGTGCAAGGAAGAATATGTACCGGATTCGTTTCTTCAGACAACACCGTCTACCTTAAAACTCTCGAAAAGGGTGACGTCATGGTGTACCCACAGGGCTTGTTGCACTTCCAAATCAATGCTGGTGGCTCTCCCGCACTGGCTTTCGTGAGCTTCAGCAGTGCCAACCCTGGGCTCCAGATTCTGGACTTTGCCTTGTTCAAAAGTAACTTCCCCACCGAACTTATCGTAGAAACCACTTTCATTGATGCTGCTATGGTGAAGAAGCTTAAGGCTGTTCTTGGAGGGTCGGGTTGA 633 0.5024 MKMILTIFFISSLLSLSHASVVDFCVADYTAPNGPAGYSCKKPAKVTVDDFVYHGLGTAGNTSNIIKAAVTPAFDAQFPGVNGLGISVARLDLAPGGVIPLHTHPGASELLVVVQGRICTGFVSSDNTVYLKTLEKGDVMVYPQGLLHFQINAGGSPALAFVSFSSANPGLQILDFALFKSNFPTELIVETTFIDAAMVKKLKAVLGGSG 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1588 210 Pfam Cupin 55 198 IPR006045 -
Ssu1g1588 210 PRINTS Germin signature 102 122 IPR001929 GO:0030145
Ssu1g1588 210 PRINTS Germin signature 165 180 IPR001929 GO:0030145
Ssu1g1588 210 PRINTS Germin signature 132 152 IPR001929 GO:0030145
Ssu1g1588 210 SUPERFAMILY RmlC-like cupins 20 203 IPR011051 -
Ssu1g1588 210 Gene3D Jelly Rolls 18 209 IPR014710 -
Ssu1g1588 210 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 10 206 - -
Ssu1g1588 210 CDD cupin_OxOx 18 206 - -
Ssu1g1588 210 ProSitePatterns Germin family signature. 97 110 IPR019780 GO:0030145
Ssu1g1588 210 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 1 10 206 - -
Ssu1g1588 210 SMART Cupin_1_3 54 200 IPR006045 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1588 Ssu-Chr1 37732145 37732777 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1588 1 209 Miscellaneous Gene Families AT5G20630 69.048 1.54e-102 293
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1588 - - gmx:100806553 364.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g1588 1 37732145 37732777 Ssu1g1588 1 37732145 37732777 ECH