Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1558 ATGGGGGAAGAGGTGACCCTCACCGCTCTGCGTCATCGAAGCGATGATCAGAGCCTCGAATTCGATATTTACCCTTTGAGTAGTTACTATTTTGGATCCAAAGACGCCGTTCCCTCCAAAGACCCCACCCTAGCTGATCGCGTTCTCAGGATGAAATACAACTATGCTGCCCGTGGAATACGCACTTGTGTGGAAGCTGTCTTACTGGTTGAATTGTTCAAACATCCGCATTTGTTGCTGTTGCAAGTAAGAAACTCCATCTATAAACTTCCCGGTGGCCAATTAAGACCAGGTGAATCAGATACTGACGGATTGAAGCGTAAGCTGGCAAGGAAGCTTTCTGTTAATGAAGATGGGGATGGGTCAGAATGGGAGGTGGGTGAATGCCTTGGAATGTGGTGGAGGCCTGATTTTGAAACATTAGTGTATCCTTTCTTGCCACCTAATGTAAAACAGCCGAAGGAGTGTACAAAAGTCTTCCTTGTGAAGCTGCCAGCGAGTCGAAAGTTCACTGTGCCAAAGAACATGAGGTTGCTTGCAGTCCCATTGTGCCAAGTTCATGAAAATCACAAGAAAACTGTAAGGACATTGGATGGTTATGGTCTGCCTTATCCAATGTTTCCTATGGGAAATGCTGGAGTGTTCAGTTGA 651 0.4608 MGEEVTLTALRHRSDDQSLEFDIYPLSSYYFGSKDAVPSKDPTLADRVLRMKYNYAARGIRTCVEAVLLVELFKHPHLLLLQVRNSIYKLPGGQLRPGESDTDGLKRKLARKLSVNEDGDGSEWEVGECLGMWWRPDFETLVYPFLPPNVKQPKECTKVFLVKLPASRKFTVPKNMRLLAVPLCQVHENHKKTVRTLDGYGLPYPMFPMGNAGVFS 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1558 216 SUPERFAMILY Nudix 54 116 IPR015797 -
Ssu1g1558 216 Gene3D Nucleoside Triphosphate Pyrophosphohydrolase 20 200 - -
Ssu1g1558 216 PANTHER PRE-MRNA CLEAVAGE FACTOR IM, 25KD SUBUNIT 6 192 IPR016706 GO:0003729|GO:0005849|GO:0006378
Ssu1g1558 216 PANTHER PRE-MRNA CLEAVAGE FACTOR IM 25 KDA SUBUNIT 1 6 192 - -
Ssu1g1558 216 Pfam Nucleotide hydrolase 21 193 IPR016706 GO:0003729|GO:0005849|GO:0006378
Ssu1g1558 216 PIRSF CPSF-25 3 199 IPR016706 GO:0003729|GO:0005849|GO:0006378
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1558 Ssu-Chr1 36888369 36893175 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1558 K14397 - gmx:100791216 356.681
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g1558 1 36888369 36893175 Ssu1g1558 1 36888369 36893175 ECH