Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1551 atggagtgcgTTGGAGCGAGGAACTTGGCGGCAATGGCGTTTTGCGTGAGTCCTTCGTCGTCGAGGTTGAGGTTGCGGAGGAAGAAGCTGTGGAGAAGGCGAACGTCGTCGTTTGGCCACGGCATTCGTTGTCGTTCGCGGTGCCTGAAGGTGGAGGCGAAAACCGGCACGGGGAGTGAGAGTTGCGTGGCAACCAAAGAGGACTTCGCCGATGAGGAAGATTACGTGAAGGCCGGTGGCTCCGAACTCGTTTTCGTGCAAATGCAACAGAACAAAGCCATGGAAATGCAATCCAAGCTTGCGGATAAGTTGCCACCTATCTCTATAGGAGATGATGATTTTCTGGATCTAGTTGTGATTGGTTGTGGTCCGGCTGGTCTTGCTCTGGCTGCTGAATCTGCCAAGTTGGGATTAAACGTTGGGCTTATTGGTCCAGACCTCccttttacaaataattatggtGTGTGGGAGGACGAATTCAAAGGTCTTGGACTTGAAGGTTGCATTGAGCATGTTTGGAAGGATACCATCGTGTATCTTGATAATAAGGATCCCATTTTAATTGGACGTTCCTATGGACGTGTCAGTCGGCATCTGCTTCATGAGGAATTGTTAAGAAGGTGTGTCGAGTCAGGTGTCTCATATCTTAGCTCAAGAGTAGAAAGTATTGTTGAGGCTAGCAATGGTCATAGTCATGTTGTCTGCGAATATGATATTGTAGTGCCCTGCAGGCTTGTTACTGTTGCATCAGGAGCAGCTTCAGGGAAACTATTGCAATATGAGGTCGGGGGTCCAAAGGTGTCTGTCCAAACAGCCTATGGTGTGGAAGTTGAGGTGGAAAACAATCCTTATGATCCAAATCTGATGGTTTTCATGGATTACAGAGACTACATGAAGCAAAATGTTCAATGTCTAGCAGCAAATTATCCAACATTTCTGTACGCAATGCCCATGTCTCGTACAAAAGTGTTCTTTGAGGAAACCTGTTTAGCGTCAAAAGATGCCATGCCTTTTGATTTACTAAAGAAAAGGCTCTTTTCAAGATTAAATACAATGGGGATCAGAATTACAAAAACTTACGAAGAGGAATGGTCGTATATCCCAGTTGGCGGATCCTTACCAAACACAGAGCAAAAGAATCTTGCATTTGGAGCAGCTGCCAGCATGGTGCATCCAGCCACAGGCTACTCCGTTGTGAGATCTTTGTCAGAAGCTCCAAAATATGCTTCGGTAATTGCTACTATTTTGAAAGATGGCCATGCAAAGGACATTATTACACATGAAAGAAGAAAGGGGAATCTATCTATGCAAGcTTGGAATACACTTTGGCCACAAGAAAGGAAACGGCAGAGAgcattctttctttttggattaGCACTAATTCTGCAGCTGGACATTGAGGGCATTAGAACATTCTTTCGTACTTTCTTCTGCTTACCTGATTGGATGTGGCAGGGATTTCTTGGCTCCTCTCTCTCATCTACAGACCTCGTATTATTTGCATTCTACATGTTCATAATAGCACCAAATAACTTGAGAATGTGTCTAGTCAGACATCTGCTTTCTGATCCAACTGGTGCAACTATGATAAAGACTTACTTAACGATATAG 1611 0.4345 MECVGARNLAAMAFCVSPSSSRLRLRRKKLWRRRTSSFGHGIRCRSRCLKVEAKTGTGSESCVATKEDFADEEDYVKAGGSELVFVQMQQNKAMEMQSKLADKLPPISIGDDDFLDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFKGLGLEGCIEHVWKDTIVYLDNKDPILIGRSYGRVSRHLLHEELLRRCVESGVSYLSSRVESIVEASNGHSHVVCEYDIVVPCRLVTVASGAASGKLLQYEVGGPKVSVQTAYGVEVEVENNPYDPNLMVFMDYRDYMKQNVQCLAANYPTFLYAMPMSRTKVFFEETCLASKDAMPFDLLKKRLFSRLNTMGIRITKTYEEEWSYIPVGGSLPNTEQKNLAFGAAASMVHPATGYSVVRSLSEAPKYASVIATILKDGHAKDIITHERRKGNLSMQAWNTLWPQERKRQRAFFLFGLALILQLDIEGIRTFFRTFFCLPDWMWQGFLGSSLSSTDLVLFAFYMFIIAPNNLRMCLVRHLLSDPTGATMIKTYLTI 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1551 536 PRINTS Pyridine nucleotide disulphide reductase class-I signature 116 138 - -
Ssu1g1551 536 PRINTS Pyridine nucleotide disulphide reductase class-I signature 246 255 - -
Ssu1g1551 536 PANTHER - 5 495 - -
Ssu1g1551 536 PANTHER LYCOPENE EPSILON CYCLASE, CHLOROPLASTIC ISOFORM X1 5 495 - -
Ssu1g1551 536 Pfam Lycopene cyclase protein 116 513 - -
Ssu1g1551 536 SUPERFAMILY FAD/NAD(P)-binding domain 115 509 IPR036188 -
Ssu1g1551 536 Gene3D - 114 475 IPR036188 -
Ssu1g1551 536 TIGRFAM carotene-cycl: lycopene cyclase family protein 116 515 IPR010108 GO:0016117|GO:0016705
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1551 K06444 - gmx:100790686 969.148
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g1551 1 36744389 36756603 Ssu1g1551 1 36744389 36756603 ECH