Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1540 ATGGCCACATCGGTGAAGAACAACTTCCCGAACCCTGCACTGGTTTCAAATCTCCAGCAAGCACTGATCCGCAGGAAGGACAGTGTGCAAGAGCAGCACCACAGCAAAGCCAAGGAACCCACCAGAGCTTCTTCAAAGCCCGTGGTACTAGTGACCAACGGGGAAGGCACAGACTCTCCTGGTCTCACATTCCTCGTCGAGGCACTCCTTCGTGGTGATGCTCTTCTTGACGTCCATGTCTGTGCCCCACAATCGGATAGATCGGCGTGTGGTCACTCGGTTACCACTAGGGAGACACTAGCTGTGTGTTCGGCACAAGTTGGTGGTGCCAATGCTTATCAAGTGTCAGGAACCCCAGCAGATTGTGTCTCTTTGGCTTTATCTGGGGTATTGTTTTCTTGGTCAAAGCCTGTTTTGGTAATCAGTGGACTAAACAAAGGAGCAACTTGTGGTTATGACACGTTGTACTCCGGAGCTGTTGCTGGAGCCAGAGAAGCACTGATTTGTGGTGTGCCGTCTCTTTGTATATCATTGAACTGCGAAAAGAATGTGAGCTGTGAAAGTGATTTGAAGGATGCAGTTACGGTATGTTTACCATTAATTCACGCAGCCATAAGAGATATACAGAAAGAAATTTTCCCCAAGAATTGTTTCCTCAATATAGGGATCCCAAGCTGTCCTTTGACAAATAAGGGTGTCAAGGTGACAAGGCAAAGTCCACAGAGGTCTTCTTTAAGTTGGCAAGCTGTGTCAACAAATAGGAATCCTTCAGCAGGCCATTACATGTCTAACCAGCAAAGTCTTGGAATCATGTTAGCACAACTAGGACGAGATGCCTCTGCTGCTGCAGCAGCACGCCGTCTAAACTCAAACCACAAGAACGTGGAGGTTGAATCAGTTGGTGTTGCTGGAAAATTCAGTTCTCAACAAACCACAAAGAAATACTTCCGAATGGAGTTAACAGAGAAAGGGCAGCAGAACATAGAGGAGGATTTAGATTCCAGAGCACTTGAAGAGGGATTTGTTACAGTTACCCCTTTGTCTTTGAATGCAAATGGTCACATGGAAATTCAATCATCAGTGTCCAGCTGGTTAGCTATTGCACTCGGTGGTGATCAATGA 1122 0.467 MATSVKNNFPNPALVSNLQQALIRRKDSVQEQHHSKAKEPTRASSKPVVLVTNGEGTDSPGLTFLVEALLRGDALLDVHVCAPQSDRSACGHSVTTRETLAVCSAQVGGANAYQVSGTPADCVSLALSGVLFSWSKPVLVISGLNKGATCGYDTLYSGAVAGAREALICGVPSLCISLNCEKNVSCESDLKDAVTVCLPLIHAAIRDIQKEIFPKNCFLNIGIPSCPLTNKGVKVTRQSPQRSSLSWQAVSTNRNPSAGHYMSNQQSLGIMLAQLGRDASAAAAARRLNSNHKNVEVESVGVAGKFSSQQTTKKYFRMELTEKGQQNIEEDLDSRALEEGFVTVTPLSLNANGHMEIQSSVSSWLAIALGGDQ 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1540 373 MobiDBLite consensus disorder prediction 26 41 - -
Ssu1g1540 373 MobiDBLite consensus disorder prediction 25 54 - -
Ssu1g1540 373 Gene3D - 37 366 IPR036523 GO:0016787
Ssu1g1540 373 Pfam Survival protein SurE 49 242 IPR002828 GO:0016787
Ssu1g1540 373 PANTHER 5'-NUCLEOTIDASE SURE 1 373 IPR030048 GO:0008252
Ssu1g1540 373 PANTHER 5'-NUCLEOTIDASE SURE-LIKE 1 373 - -
Ssu1g1540 373 SUPERFAMILY SurE-like 48 363 IPR036523 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1540 Ssu-Chr1 36539995 36542991 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1540 K03787 - gmx:100785738 645.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g1540 1 36539995 36542991 Ssu1g1540 1 36539995 36542991 ECH