Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1539 ATGGTGGTAAGGATTAGGCTATCTCGGTTCGGATGTAAGAACAAGCCCTTCTATCGGGTCATGGCTGCGGATAGCAGATCCCCAAGAGATGGCAAACACCTCGAAGTTCTCGGTTACTATCATCCCTTACCAGGTCAAGATGGTGGCAAAAGAATGGGTCTCAACTTCGAAAGAGTGAAgTATTGGCTTTCTGTTGGAGCTCAGCCTTCGGAGCCCATGGAGCGTCTTCTGTTCCGAGCTGGGTTACTCCCCCCGCCACCGATGGTGGCAATGGGGTGTAAAGGTGGACCACGTGATACTCGCCCTGTGGATGCTCTAACTGGACGTGTCTTGAATCAAGAGAAGCCAGCTAATGCCAATAGCAATGAGCATGAACATGACACTCCTGAAAAccctttttag 402 0.4925 MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYHPLPGQDGGKRMGLNFERVKYWLSVGAQPSEPMERLLFRAGLLPPPPMVAMGCKGGPRDTRPVDALTGRVLNQEKPANANSNEHEHDTPENPF 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1539 133 MobiDBLite consensus disorder prediction 119 133 - -
Ssu1g1539 133 SUPERFAMILY Ribosomal protein S16 3 92 IPR023803 -
Ssu1g1539 133 Hamap 30S ribosomal protein S16 [rpsP]. 2 80 IPR000307 GO:0003735|GO:0005840|GO:0006412
Ssu1g1539 133 PANTHER 30S RIBOSOMAL PROTEIN S16-LIKE 1 114 - -
Ssu1g1539 133 MobiDBLite consensus disorder prediction 93 133 - -
Ssu1g1539 133 TIGRFAM S16: ribosomal protein bS16 3 82 IPR000307 GO:0003735|GO:0005840|GO:0006412
Ssu1g1539 133 Gene3D - 1 131 IPR023803 -
Ssu1g1539 133 PANTHER 30S RIBOSOMAL PROTEIN S16 1 114 IPR000307 GO:0003735|GO:0005840|GO:0006412
Ssu1g1539 133 Pfam Ribosomal protein S16 9 70 IPR000307 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1539 Ssu-Chr1 36532158 36532788 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1539 K02959 - gmx:100305630 259.61