Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1526 ATGGAGACTCCTCCGCAGCAAGGCGTGGTGAAGAAAAAGGAGACACGGGGCCGAAAGCCGAAGCCGAAGgaggagaagaaggaggaacAGCAACAACACGCGAAGACGATGAAGGAAGGGAGAAAAACGCAGCAACAGagccaacaacaacaaccttcgGTGGACGAGAAATACACGCAATGGAAGTCCCTCGTTCCTGTCCTCTACGACTGGCTCGCCAACCACAACCTCGTCTGGCCCTCTCTCTCTTGCCGGTGGGGCCCTCAGCTCGAACAAGCCACTTACAAGAATCGCCAGCGACTCTACCTTTCCGAGCAGACTGATGGTAGCGTGCCGAATACTCTGGTGATTGCGAATTGCGAGGTTGTGAAGCCTAGGGTTGCGGCTGCAGAGCACATTTCTCAGTTTAATGAAGAGGCGCGGTCCCCATTTGTGAAGAAGTACAAGACCATCATACATCCTGGCGagGTGAACAGAATTAGGGAGTTGCCACAAAATTCCAAGATAGTGGCGACACATACAGACAGCCCTGATGTCCTTGTTTGGGATGTTGAAAATCAACCTAACCGTCATGCTGTCCTTGGAGCTACAAACTCTCGTCCAGATTTGATATTGACTGGACACCAAGATAATGCAGAATTTGCTCTTGCGATGTGCCCAACTGAGCCCTATGTTCTTTCAGGAGGAAAGGACAAAACGGTGGTGTTGTGGAGTATTGAAGACCATATAACATCAGCTGCCACAGACTCCAAATCTGGTGGGTCAATTATCAAACCAAACCCCAAATCTGGAGAAGGCAATGATAAAACTGCTGATGGCCCTTCTGTTGGACCACGAGGTATCTACTGTGGGCATGAGGATACTGTTGAAGATGTGACTTTCTGCCCTTCTAGTGCACAGGAGTTCTGTAGCGTTGGAGATGATTCTCGTCTCATCTTATGGGATGCACGTGTTGGCTCTAGCCCTGTGGTTAAGGTTGAAAAAGCTCATAATGCTGATCTTCACTGTGTTGACTGGAATCCCCATGATGATAATCTGATTCTTACTGGGTCAGCAGATAATTCTGTTCGCATGTTTGATCGCCGCAATCTCACCACTAATGGAGTTGGGTCACCCATCCATAAATTTGAGGGTCACAAAGCTGCTGTTCTTTGTGTTCAGTGGTCTCCAGACAAATCATCTGTATTTGGAAGTTCAGCTGAAGATGGTCTTTTAAACATTTGGGATTATGAGAAGGTAGGTAAAAAGATAGAGCGATCTGGAAAATCAATAAGTTCTCCTCCAGGGTTGTTTTTCCAACATGCAGGTCATAGAGATAAAGTAGTTGACTTCCATTGGAATGCATATGATCCATGGACGATTGTTAGTGTATCTGATGACTGCGAAAGTACTGGTGGAGGGGGAACATTGCAgATATGGCGCATGAGTGACTTGATCTACAGACCAGAGGATGAGGTTTTGGCAGAGCTGGAGAAATTCAAATCTCATGTGGTGGCGTGTGCTTCAAAGTCTGAGAAATGA 1521 0.4583 METPPQQGVVKKKETRGRKPKPKEEKKEEQQQHAKTMKEGRKTQQQSQQQQPSVDEKYTQWKSLVPVLYDWLANHNLVWPSLSCRWGPQLEQATYKNRQRLYLSEQTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKYKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLVWDVENQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKTVVLWSIEDHITSAATDSKSGGSIIKPNPKSGEGNDKTADGPSVGPRGIYCGHEDTVEDVTFCPSSAQEFCSVGDDSRLILWDARVGSSPVVKVEKAHNADLHCVDWNPHDDNLILTGSADNSVRMFDRRNLTTNGVGSPIHKFEGHKAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKIERSGKSISSPPGLFFQHAGHRDKVVDFHWNAYDPWTIVSVSDDCESTGGGGTLQIWRMSDLIYRPEDEVLAELEKFKSHVVACASKSEK 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1526 506 ProSiteProfiles Trp-Asp (WD) repeats profile. 376 411 IPR001680 GO:0005515
Ssu1g1526 506 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 376 411 - -
Ssu1g1526 506 Pfam Histone-binding protein RBBP4 or subunit C of CAF1 complex 56 122 IPR022052 -
Ssu1g1526 506 Pfam WD domain, G-beta repeat 280 315 IPR001680 GO:0005515
Ssu1g1526 506 Pfam WD domain, G-beta repeat 328 360 IPR001680 GO:0005515
Ssu1g1526 506 Pfam WD domain, G-beta repeat 203 238 IPR001680 GO:0005515
Ssu1g1526 506 Pfam WD domain, G-beta repeat 370 409 IPR001680 GO:0005515
Ssu1g1526 506 Gene3D - 29 492 IPR015943 GO:0005515
Ssu1g1526 506 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 327 360 - -
Ssu1g1526 506 SMART WD40_4 369 409 IPR001680 GO:0005515
Ssu1g1526 506 SMART WD40_4 320 360 IPR001680 GO:0005515
Ssu1g1526 506 SMART WD40_4 198 238 IPR001680 GO:0005515
Ssu1g1526 506 SMART WD40_4 427 474 IPR001680 GO:0005515
Ssu1g1526 506 SMART WD40_4 275 315 IPR001680 GO:0005515
Ssu1g1526 506 MobiDBLite consensus disorder prediction 41 56 - -
Ssu1g1526 506 ProSiteProfiles Trp-Asp (WD) repeats profile. 282 324 IPR001680 GO:0005515
Ssu1g1526 506 MobiDBLite consensus disorder prediction 7 40 - -
Ssu1g1526 506 PANTHER WD40 REPEAT FAMILY 28 503 - -
Ssu1g1526 506 MobiDBLite consensus disorder prediction 1 56 - -
Ssu1g1526 506 ProSiteProfiles Trp-Asp (WD) repeats profile. 327 360 IPR001680 GO:0005515
Ssu1g1526 506 PANTHER WD-40 REPEAT-CONTAINING PROTEIN MSI4 28 503 - -
Ssu1g1526 506 SUPERFAMILY WD40 repeat-like 143 497 IPR036322 GO:0005515
Ssu1g1526 506 MobiDBLite consensus disorder prediction 247 277 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1526 Ssu-Chr1 35935544 35942096 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1526 284 469 Miscellaneous Gene Families AT5G08390 25.907 4.24e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1526 K10752 - gmx:100779302 956.436
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g1526 1 35935544 35942096 Ssu1g1526 1 35935544 35942096 ECH