Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1514 ATGGCTCATGCTATAGTGAACTTCATATTGCAAAGTCTTGGTGATTTGCTCATTCAAGAAGCAGTGTTCTTATATGGGGTGGAAGATAAAGTTTTGCAGCTGCAAACTGAATTGATGAGGATGCGGTCTTACTTGCAAGATGCAGATAGAAGGCAAGATGAAAATGAAAGCCTGAAGAATTGGATTTCAGAAATCAGAGAAGCTGCTTATGATTCTGATGATGTCATTGAGGCATATGCCCTCAGAGGAGCCTCAAGAAGAAATTTGACAGGTGTATTGAACCTCATCAAAAGGTATGCTTTAATCATCAACCGGTTCATAGAAATCCACATGGTGGGATCTCATGTTGATAATGTCATAGCTAGGATTTCTAGCCTCACAAGGAGTTTGGAAACTTATGGCATAAAACCTGAGATAGCAGAAGCCTCAAATTCTATGCATGGGAGGCAGAGAGCTTTAAGAAGGTCTTACTCACATGTTATTGAAGAGGACATAATTGGTGTTGAAGATGATGTTAAGATTTTGGAGTCATGTTTGGTCGACCCCAACAAGGGCTATAAAGTAGTGGCCATTTGTGGAATGGGGGGTTTGGGGAAAACAACATTGGCAAAGAAAGTATACCATAGTCTTGATGTAAGTAACAATTTTGAGAGCTTGGCTTGGGCTTACATATCACAGCATTGCCAAGCAAGGGATGTGTGGGAAGGAATTTTGTTTAATCTGATCTCTCCTTCCAAAGAGCTAAGAGAGGAAATTGCCAATCAGAGAGATGAAGAGGTTGCAAGGATGCTTTACCAAGTTCAAGTGGAGAAGAGTTGCTTAGTAGTCCTTGATGATATTTGGACTACAGACACATGGAAGAAACTGAGTCCTGCGTTCCCTCATGGAAGATCATCATCAGCAGTTGGTAGCAAAATATTGCTAACTACTCGAAACAGTGATGTTCCATTACAGATGGATCCTAGTTGTTATCTTCACAAACCAAAATGTTTGAATGAAGATGACAGCTGGGAGTTGTTCCAAAAGAAGGCATTTCCAAAAATTGATCATCCAGACTTAGAGATGAAGAAGTTGGGAAAGGAAATGGTAGAAAGATGTGGAGGTTTACCATTGGCCATCATTGTGCTTGGAGGACTGTTAGCATCAAAGCCGACCGTCTATGAATGGGACACTGTGCGTCAGAACATCAATCCATATTTGAGGAGAGCAAAAGGCCAAGAACAATGCTTAGGAGAGGTGTTGGCTTTGAGCTATTATGAATTGCCATACCAGTTGAAGCCATGCTTCCTACACTTGGCCCATTTCCCGGAAAATTTAGAGATACCAACAAAGAAACTAATAAGAATATGGGTGGCAGAGGGTATTATATCATTGGATCAGAATGAAGGAGAAGGTGAGGAAGCTCTTGAGGATGTGGCACAACGTTACTTGACAGAGCTAGTGGAGAGGTGCATGATTCAGGTTGTTGAAAAGGGTTCAACAGGAAGAATTAGAACTTGCCAAATGCACAGCCTCATGAGGGACCTATGTGTTGATAAGGCACGTCAGGAAAACTTTCTTGTGGTGATTAATTCCTGGAATGTAGATGAAACTAGAGGGGCATCAAGGGCAAGGCCAATAGGAAAAGTTCGCAGGATTGCCTTGTATCTGGATCAAGATGTTGATAGGTTCTTCCCTTCGCACTTGAAAAGCCACCACCATCTCAGATCTCTCCTTTGCTACCATGAAAAGACAGCTAGGCTAAGTGAATGGGGGTTGATGAAGTCCTTTTTCAACAAATGTAAGTTACTTAGAGTCTTGAACTTGGAAGGAATACAGGGTCAAGCAGGGAAGTTACCAAAAGAAATTGGCTTCTTGACCCACCTAAGGTTTCTCAGTCTACGGAATACAAAAATTGATGAGTTGCCCCCATCAATAGGCAATTTGAAGTGCTTGATGACCCTGGATCTTCTAACGGGGAATTCAACCGTGCAAATACCAAATGTCATAGGGAACATGCACAGAATGAGACATCTATATCTACCAGAGTCTTGCGGTGATAGCATTGAGAGATGGCAACTGGACAACCTGAAAAACTTGCAGACCTTGGTTAACTTCCCAGCAGAGAAGTGTGATGTAAGAGATCTCATGAAATTGACCAATTTAAGAAAATTGGTGATAGATGATCCTAATTTTGGAGATATCTTTAGGTACCCTAATGTGACATTTAGCCACCTAGAGTCGTTGTTTTTTGTCAGTTCTGAGGATATATCAATTGTCCATGTTGCATTAGGATGTCCCAATCTTTACAAGCTTCACATAGAAGGGCCTATAAGGAATTTCCCAGAACCCCACCAACTTTCTTCCAAGATTGTGAAGCTAAAGTTGAAGGGTTCTGGACTTCATGTAGATCCAATGCCAACATTAGAGAATCTTCCCAATTTAAGGTTGCTTGAGCTACAACTTGACTCATTCATGGGCAAGCAACTACTTTGTTCCCGCAAAGGCTTTCCTCAGCTCAAGTCTCTGCTAATCTATGACTTGCCCAATCTTGAAGAGTGGAAGTTGGACAAAGGAGCCATGCCTAGTCTTAGCAAACTTGAGATTGCAAATTGCACTAAGCTTGAGAGGGTTCCAGATGGGCTCAGGTTTGTCACTACTCTTCAGGATTTGGAGATCAGATCAATGTTTGCAGCATTCAGAACCAAACTAGAAAAAGGAGGAGAGGATCATTACAAAGTCCAACATGTGCCAACTGTGGTATTTTGTTATTGTGACTATTAG 2763 0.4159 MAHAIVNFILQSLGDLLIQEAVFLYGVEDKVLQLQTELMRMRSYLQDADRRQDENESLKNWISEIREAAYDSDDVIEAYALRGASRRNLTGVLNLIKRYALIINRFIEIHMVGSHVDNVIARISSLTRSLETYGIKPEIAEASNSMHGRQRALRRSYSHVIEEDIIGVEDDVKILESCLVDPNKGYKVVAICGMGGLGKTTLAKKVYHSLDVSNNFESLAWAYISQHCQARDVWEGILFNLISPSKELREEIANQRDEEVARMLYQVQVEKSCLVVLDDIWTTDTWKKLSPAFPHGRSSSAVGSKILLTTRNSDVPLQMDPSCYLHKPKCLNEDDSWELFQKKAFPKIDHPDLEMKKLGKEMVERCGGLPLAIIVLGGLLASKPTVYEWDTVRQNINPYLRRAKGQEQCLGEVLALSYYELPYQLKPCFLHLAHFPENLEIPTKKLIRIWVAEGIISLDQNEGEGEEALEDVAQRYLTELVERCMIQVVEKGSTGRIRTCQMHSLMRDLCVDKARQENFLVVINSWNVDETRGASRARPIGKVRRIALYLDQDVDRFFPSHLKSHHHLRSLLCYHEKTARLSEWGLMKSFFNKCKLLRVLNLEGIQGQAGKLPKEIGFLTHLRFLSLRNTKIDELPPSIGNLKCLMTLDLLTGNSTVQIPNVIGNMHRMRHLYLPESCGDSIERWQLDNLKNLQTLVNFPAEKCDVRDLMKLTNLRKLVIDDPNFGDIFRYPNVTFSHLESLFFVSSEDISIVHVALGCPNLYKLHIEGPIRNFPEPHQLSSKIVKLKLKGSGLHVDPMPTLENLPNLRLLELQLDSFMGKQLLCSRKGFPQLKSLLIYDLPNLEEWKLDKGAMPSLSKLEIANCTKLERVPDGLRFVTTLQDLEIRSMFAAFRTKLEKGGEDHYKVQHVPTVVFCYCDY 920
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1514 920 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 148 432 IPR027417 -
Ssu1g1514 920 Gene3D - 330 416 IPR042197 -
Ssu1g1514 920 Pfam NB-ARC domain 170 405 IPR002182 GO:0043531
Ssu1g1514 920 Gene3D - 5 112 - -
Ssu1g1514 920 Pfam Rx N-terminal domain 5 87 IPR041118 -
Ssu1g1514 920 CDD RX-CC_like 2 128 IPR038005 -
Ssu1g1514 920 Gene3D - 417 514 IPR036388 -
Ssu1g1514 920 PANTHER DISEASE RESISTANCE PROTEIN RP 2 889 IPR044974 GO:0006952
Ssu1g1514 920 PANTHER DISEASE RESISTANCE RPP8-LIKE PROTEIN 3-RELATED 2 889 - -
Ssu1g1514 920 SUPERFAMILY L domain-like 501 888 - -
Ssu1g1514 920 PRINTS Disease resistance protein signature 852 868 - -
Ssu1g1514 920 PRINTS Disease resistance protein signature 267 281 - -
Ssu1g1514 920 PRINTS Disease resistance protein signature 366 380 - -
Ssu1g1514 920 PRINTS Disease resistance protein signature 188 203 - -
Ssu1g1514 920 Gene3D - 151 323 IPR027417 -
Ssu1g1514 920 Gene3D Ribonuclease Inhibitor 534 899 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1514 Ssu-Chr1 35650031 35653615 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1514 545 674 Receptor kinase-like Gene Family AT3G11080 34.848 3.60e-09 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1514 - - gmx:100305356 1571.6