Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1487 ATGGATTCGGAAACTGAAGACACAAAACCCAAAGTTCCCAAGAAGGAGAAGAACAAGAAGAGCAAGAAGAAAAAGGATGTTCCACCTCAACCTGATCAGATTGAGGTGGAGGTCGAGGTTGTCCACGAGCACCCGAACAAAACCCCTCCTGTTGTTGGATATTTCCCTTCCGGCTTTGATCCGCTCAAGAATCACGGCGGCGCCCCCGATTTTCAGGTTTACCGGCACCGGAACATGCCCAAGAGGCTGCAGCTTGTGGTTAGCCCTGCCGGGTCTTCGGTGGAATTCGTGGGAACCAGTTATTCTGGCGAGGCTGCGGCCGGTCACCGGGCCATGTACGCGCTAGGAGTTCTTGACAAGGAAGCTCGGACCCTCAAGGTTGTGCCCATTGCTGGTAACAAGATGTTCAGATTGGAGCCGAAGGTTAAAGGCGTGGGAGCTGCTGACAACAAGCCTGCACATTCGACGTTGGAAGAGATGACTCCGCAGCAGAAGTTAGCGGAGACTACTGCTATATGGGGAACAAAGAAGGATATAGAGAAGGCTAAAAAGAAGCTAGCTCTCAAACAAGATGAAGATCCTGATTCTCAAAGGAATCTGgatgtgaaaatgaaaaatgttgttGTAAACAAAAAGGCTCTTGAAAGTACAGAAGCTCATGTTTCTCGCAATATACCACCATATGATACTTCTGCAACCACACCTCAGGAGGCATATGTATTGGATAAAATCATCCTTAAGGGAGAATGGGATTATCTTgaagacatttataataatttgcaACTGGGAAAAGAAACAGACTTCAGTGCTTATCCAACTTTTGTTCGCAACAGGATAGAGAGATTAAGGAAAATTAAGGATGAGGCGGAAAAGAAGCAGCTTTCCTGCATATTCTCATACATCAATCACCTTATAAAGTTCAAAGATCAGCATTCCTTTGATGTTTTCTCTGCAAAGGGCCATAAAATCCCCAACATTCTGCGTCATAAATTTTCAACAATGTTTGCTGTTTCTGAATCAAAAAGGCTGCCCCCTCAAAAGATTAGTCTTCTCATTTCTTATGTCTTGGTGCTAACGCTTTTCTCTGATGAGTTCCGAACTGACTACACAGATATAGCAAAGGATCTGAGCATGAGTGTAGTGCCCGTGAGACAATTCTATGAGCAGTTGGGTTGCAAAATTTCCCGCCAGAAAAACAGTTGGTGTGCCACACTTCCTGTCCCTCTTAAATTTCCTGAGCTGAGGCAAAGGAAGCGGAAACGATAG 1266 0.4423 MDSETEDTKPKVPKKEKNKKSKKKKDVPPQPDQIEVEVEVVHEHPNKTPPVVGYFPSGFDPLKNHGGAPDFQVYRHRNMPKRLQLVVSPAGSSVEFVGTSYSGEAAAGHRAMYALGVLDKEARTLKVVPIAGNKMFRLEPKVKGVGAADNKPAHSTLEEMTPQQKLAETTAIWGTKKDIEKAKKKLALKQDEDPDSQRNLDVKMKNVVVNKKALESTEAHVSRNIPPYDTSATTPQEAYVLDKIILKGEWDYLEDIYNNLQLGKETDFSAYPTFVRNRIERLRKIKDEAEKKQLSCIFSYINHLIKFKDQHSFDVFSAKGHKIPNILRHKFSTMFAVSESKRLPPQKISLLISYVLVLTLFSDEFRTDYTDIAKDLSMSVVPVRQFYEQLGCKISRQKNSWCATLPVPLKFPELRQRKRKR 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1487 421 Pfam A49-like RNA polymerase I associated factor 70 412 IPR009668 GO:0003677|GO:0006351
Ssu1g1487 421 MobiDBLite consensus disorder prediction 1 33 - -
Ssu1g1487 421 PANTHER DNA-DIRECTED RNA POLYMERASE I SUBUNIT RPA49 16 421 IPR009668 GO:0003677|GO:0006351
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1487 Ssu-Chr1 34744756 34748975 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1487 K03005 - gmx:100812427 668.692