Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1480 ATGGATGTCGTGATGTGTAATGTACTGATCAAAGCCCTGTTTATGATGGGGGCTTTTGAAGATGTTTATACTCTTTACAAAGGAATGCCAGAAATGGATCTGATTCCGAATTCGGTGACTTACTGCACAATGATTGATGGATATTGCAAGGTAGGTAGAATTGGTGAGGCACTCGAGGTATTTGATGAATTTAGAACGGCTTCGATCTCTTCACATGCATGCTACAATAGCATTATTAAGGGCCTTTGCAAGAATGGCATGGCAGAAATGGCCATTGAGGCATTACTTGAACTCAATTGTAAAGGTCTCGAGTTGGATACAGGTACATTTAAGATGTTAATGAAgacaatttttgaagaaaacagTACAAAGGAGGCTTTAGATTTAGTTTACAGAATGCAAGTTTTGGGACCAGACATGTATAGTGCAGTAATTAACGATTCCGTCTTTTTATTATGTCAAAGAGGATTACTTGATGATGCAAATCATTTGTGCATGATGATGAAAAAGGAAGGCCTATCTGTCACATGCGAGTCTTATTATTCGATTTTGAGAGGGCATCTTAGTAATGGGAATAGGGAGCAAATTTTGCCCCTTTTGAATAGCTTCCTGAAAGAATATGGTCTAGTTGAACCAATGGTACAAAAGATACTTGCATGCTACCTCTGTCTGAAAGATGTTGATAGTGCCCTTCGATTTCTTGGAAAAACAGTGGATAACTCTTTAGCAGTTGCTTTTCCTGTCTCTATTCTCAAGATTCTCATAAGGGAGGGTAGAGCTTTAGATGCATATAAGCTTGTTACAGAGACTCAAGATAATTTACCAGTCATGTATGTTGATTATGCCATTGTGATTGATGGCTTGTGCAAGGGAGGATATCTCAATAAAGCATTGGATCTCTGTGCCGTTGTTGAAAAGAAGGGGATGAATTTGAACATAGTCGTgtataattcaataataaatggaTTGTGTCATGAGGGACGTCTTATTGAAGCATTTCGGCTATTGGATTCATTAGAGAAACTTAATTTGGTACCCTCTGAAATAACTTATGCTACGTTAATTTATGCTCTATGTAGAGAGGGATTTTTGCTAGATGCAGAGCATGTTTTCAGGAAAATGGTCCTGAAGGGCTTTCAGCCAAAAGTACAAGTTTACAATTCATTACTTGATAGTATTTCTAAGTTTGGTCAATTAGAAAAGGCATTCGAGCTTCTAAATGATATGGAGACAAGATATATTGAGCCTGACAGTCTGACTATTAGTGCTGTAATTAATTGCTATTGCCAAAAGGGCGACATGCAAGGAGCCCTTGAATTCTATTATAAGTTAAAGAGGAAGGATATATCACCTGATTTTTTTGGGTTCTTGTGTTTGATAAGAGGTCTATGTACCAAGGGAAGGATGGAAGAAACCAGGAGTGTCTTGAGAGAAATGCTCCAGTCCAAGTATGTTGCAGAGTTAATTAACATAGTCAACAAGGAAGTTGATACTGAGTCAATAAGTGATTTTCTTGCCACTTTGTGTGAGCAAGGAAGGGTTCAAGAAGCTGTTACAGTTCTCAATGAAATTGCATGCATGCTTTTTCCTGTTCAAAGGTTGTCCACTTATAATCAAGGGTTCCATAAACAACAGAAGATTTATGAATGTAAGGATTTTGGTTCAAAATCTTCAAGCATTCTACCTTCCTCTTGCACAAGTGGTTTGAATTTTGGATCTTGTGATAACAAAGATGTAAGGAATCTTACAACAAATAATGTCGGTTACATGAAAAGATCTCAGCTGCATGGCTTTGACTTCTATTATTCTAGAATTGCTGCACTTTGTGCCAAAGGGGAGGCGCAGAAAGCTAATCAATCAGCAAAAGAAATGCTTTCTGACCTGACAGAGTCCATGAGCTGA 1902 0.3728 MDVVMCNVLIKALFMMGAFEDVYTLYKGMPEMDLIPNSVTYCTMIDGYCKVGRIGEALEVFDEFRTASISSHACYNSIIKGLCKNGMAEMAIEALLELNCKGLELDTGTFKMLMKTIFEENSTKEALDLVYRMQVLGPDMYSAVINDSVFLLCQRGLLDDANHLCMMMKKEGLSVTCESYYSILRGHLSNGNREQILPLLNSFLKEYGLVEPMVQKILACYLCLKDVDSALRFLGKTVDNSLAVAFPVSILKILIREGRALDAYKLVTETQDNLPVMYVDYAIVIDGLCKGGYLNKALDLCAVVEKKGMNLNIVVYNSIINGLCHEGRLIEAFRLLDSLEKLNLVPSEITYATLIYALCREGFLLDAEHVFRKMVLKGFQPKVQVYNSLLDSISKFGQLEKAFELLNDMETRYIEPDSLTISAVINCYCQKGDMQGALEFYYKLKRKDISPDFFGFLCLIRGLCTKGRMEETRSVLREMLQSKYVAELINIVNKEVDTESISDFLATLCEQGRVQEAVTVLNEIACMLFPVQRLSTYNQGFHKQQKIYECKDFGSKSSSILPSSCTSGLNFGSCDNKDVRNLTTNNVGYMKRSQLHGFDFYYSRIAALCAKGEAQKANQSAKEMLSDLTESMS 633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1480 633 Pfam PPR repeat family 381 429 IPR002885 -
Ssu1g1480 633 Pfam PPR repeat family 73 115 IPR002885 -
Ssu1g1480 633 Pfam PPR repeat family 312 360 IPR002885 -
Ssu1g1480 633 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 2 36 IPR002885 -
Ssu1g1480 633 Pfam PPR repeat 281 308 IPR002885 -
Ssu1g1480 633 Pfam PPR repeat 4 32 IPR002885 -
Ssu1g1480 633 TIGRFAM PPR: pentatricopeptide repeat domain 4 37 IPR002885 -
Ssu1g1480 633 TIGRFAM PPR: pentatricopeptide repeat domain 74 106 IPR002885 -
Ssu1g1480 633 TIGRFAM PPR: pentatricopeptide repeat domain 349 381 IPR002885 -
Ssu1g1480 633 TIGRFAM PPR: pentatricopeptide repeat domain 420 452 IPR002885 -
Ssu1g1480 633 TIGRFAM PPR: pentatricopeptide repeat domain 314 347 IPR002885 -
Ssu1g1480 633 TIGRFAM PPR: pentatricopeptide repeat domain 39 69 IPR002885 -
Ssu1g1480 633 TIGRFAM PPR: pentatricopeptide repeat domain 385 417 IPR002885 -
Ssu1g1480 633 TIGRFAM PPR: pentatricopeptide repeat domain 458 484 IPR002885 -
Ssu1g1480 633 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 312 346 IPR002885 -
Ssu1g1480 633 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN PET309, MITOCHONDRIAL 217 625 - -
Ssu1g1480 633 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN PET309, MITOCHONDRIAL 74 269 - -
Ssu1g1480 633 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN PET309, MITOCHONDRIAL 144 484 - -
Ssu1g1480 633 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN PET309, MITOCHONDRIAL 2 201 - -
Ssu1g1480 633 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 417 451 IPR002885 -
Ssu1g1480 633 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 347 381 IPR002885 -
Ssu1g1480 633 Gene3D Tetratricopeptide repeat domain 72 149 IPR011990 GO:0005515
Ssu1g1480 633 Gene3D Tetratricopeptide repeat domain 1 71 IPR011990 GO:0005515
Ssu1g1480 633 Gene3D Tetratricopeptide repeat domain 213 362 IPR011990 GO:0005515
Ssu1g1480 633 Gene3D Tetratricopeptide repeat domain 363 568 IPR011990 GO:0005515
Ssu1g1480 633 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 382 416 IPR002885 -
Ssu1g1480 633 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 37 71 IPR002885 -
Ssu1g1480 633 Pfam PPR repeat 447 479 IPR002885 -
Ssu1g1480 633 Pfam PPR repeat 34 63 IPR002885 -
Ssu1g1480 633 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 452 486 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1480 308 625 Glycosyltransferase AT1G05670 26.220 2.25e-27 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1480 - K17964 gmx:100783405 1108.2