Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1466 ATGAAGACACCGCAACCTGCTTCTAAATTGAAAAGGAAAAGGGAAGAAGGTAAAggtaagaaaaaagaagaagaagataacaagcaggaaaaaaggaaaattgcaGATGTCCCTAAATCTCATAGCATGCTGGACGGTGTCCATGATGAAGGGGAAGGGTTTGACAATGAGTCTCCAAGAAGCAATGTTGTGGAAAGTTTGTGGCAAGATCCTGATGACAATGATTCTGGATTAACAGAAGGTTCTGAAACTGAACAAGATGTTGGATTTCATTCAGATGGAGAGGATATTGGAATTAATGGTCGACCAACTTCTGAAGATTCAGTGCATTTGAGCTCTTTTGATTTACATTTGCAACATAATTTATCCAAAGAAGAAATTGACAGCCAAAGGAACAGGAAATTGAGCTGGGAGACTCCAGCTATTGGCTTGTCAAATTGCAAGTGGACAGGAACTGGAGAGAACATTTTGGAGGATTTGGATATCAATTCTTGTCATGGTCTCAAAGCAAAGTTGTCTGAGCATTGGATGGATGTCTACAAGACATCTGGAGGCAAAGATATTAGTTCGCCTAAACAAAAGATGTTTTTCTCCCTTTGCAGCAGCTACCGCGATATACTTTACTGTAACAGGAGGCCTTTCTATCTCAAAGGCCTTGAAGAGGCAAGCATCATGGATGCATACATAATGCATTCTCTCAATCATGTCTTCAGAGCTAGAGACtgtgtgaaaaaaaatgatgccaAACTGACCAAGCTTAAAGAGAATGCTGATAGTGATAGATTTCGAGATCAGGGTTTTACTCGTCCTAAGgttttaattttattgccaTTGGCAAGTATTGTGTACCGTGTTGTAAGGAGGCTTGTACAGCTTACACCTTCAGCTTACAAGGTCAATGTTGAACATATGGATCGTTTTTCCACTAAATTTGGAAGTGAAGAACATAAAGGTGATACAGAAAATGGCCAAGAGTCTGAAAATGTAAAACCTCACAAGTCTTCCAAAGCGGCTGACTTTCAAATACTTTTTGGTGGCAATAATGAGGATGACTTTATGATTGGCATCAAATTTACTAGGAAGACAATCAAGTTGTTCAGTGATTTCCATACCTCAGACATTATTATTGCCTCAGCACTTTGCTTGGTTAATAAAATTGAAGAGGCTAGGAGTAATAAGGAAAAAGATGTAGATTTTCTTTCGTCCATAGAGGTTCTGATTATTGATCATGCAGATGTAATGGTAATGCAGAATTGGTCTCATGTGCATACAGTTATTGAACACTTGAACCGCTTACCATCTAAGCAGCCTGGAACAGATGTAATGCGCATTAGACCATGgTATCTTGATGATCATGCCAGATTTTACAGGCAAACAATAATACTGGGTTTTTATTCAAATCCAGATATAAATGCTTCATTCAATCATCAGTGCCTTAATTATCAAGGGAAGGTGAAACTGATCTGTGAATATAAAGGTGTCTTACACAAAGTGCTACCCGAAATACGACAAATTTATGAACGATTTAACGTAAACTCAATAGTAGAAGCTGATGATGCccgttttgattattttgttaaaaagGTTTTCCCCAGAATAAAAGATTTAGATCagGGAGGGACCATGTTATTTACCAGTTCTTACTTTGAATTTATTCGAATCCGAAATTTTTTAAAGTCACAGAATGCCTCTTTTTGTCTGCTTGGGGAgtATACAACCCAAAGTGATATTTCTCGTGCACGGCTTTGGTTCtatgaaggaagaagaaaaattatgcTTTACACTGAGAGATCTCATTTTTTCCACAGATATAAGATTCGTGGGGTTCagaatttaatcatttattcaCTCCCAGAGAGGAAGGAATTTTACCCGGAGATTGTGAATATGCTTGATGGGTCTGACAATATGACATGCACCATCCTTTTTTCCTGCCTTGACAAGCTTCGGCTGGAAAGAATTGTTGGAACTACTCCAGCCAAAAGGATGGTGGCTGCGGAGAAGGGTGTTTTTGTTTTCTGCCATTAG 2028 0.3614 MKTPQPASKLKRKREEGKGKKKEEEDNKQEKRKIADVPKSHSMLDGVHDEGEGFDNESPRSNVVESLWQDPDDNDSGLTEGSETEQDVGFHSDGEDIGINGRPTSEDSVHLSSFDLHLQHNLSKEEIDSQRNRKLSWETPAIGLSNCKWTGTGENILEDLDINSCHGLKAKLSEHWMDVYKTSGGKDISSPKQKMFFSLCSSYRDILYCNRRPFYLKGLEEASIMDAYIMHSLNHVFRARDCVKKNDAKLTKLKENADSDRFRDQGFTRPKVLILLPLASIVYRVVRRLVQLTPSAYKVNVEHMDRFSTKFGSEEHKGDTENGQESENVKPHKSSKAADFQILFGGNNEDDFMIGIKFTRKTIKLFSDFHTSDIIIASALCLVNKIEEARSNKEKDVDFLSSIEVLIIDHADVMVMQNWSHVHTVIEHLNRLPSKQPGTDVMRIRPWYLDDHARFYRQTIILGFYSNPDINASFNHQCLNYQGKVKLICEYKGVLHKVLPEIRQIYERFNVNSIVEADDARFDYFVKKVFPRIKDLDQGGTMLFTSSYFEFIRIRNFLKSQNASFCLLGEYTTQSDISRARLWFYEGRRKIMLYTERSHFFHRYKIRGVQNLIIYSLPERKEFYPEIVNMLDGSDNMTCTILFSCLDKLRLERIVGTTPAKRMVAAEKGVFVFCH 675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1466 675 Coils Coil 7 27 - -
Ssu1g1466 675 Gene3D - 227 446 IPR027417 -
Ssu1g1466 675 PANTHER ORF PROTEIN-RELATED 15 674 IPR010678 GO:0005730|GO:0006364|GO:0034511
Ssu1g1466 675 MobiDBLite consensus disorder prediction 8 56 - -
Ssu1g1466 675 Coils Coil 674 675 - -
Ssu1g1466 675 Pfam Utp25, U3 small nucleolar RNA-associated SSU processome protein 25 191 673 IPR010678 GO:0005730|GO:0006364|GO:0034511
Ssu1g1466 675 MobiDBLite consensus disorder prediction 1 95 - -
Ssu1g1466 675 MobiDBLite consensus disorder prediction 311 332 - -
Ssu1g1466 675 MobiDBLite consensus disorder prediction 59 85 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1466 K14774 - gmx:100810500 1238.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g1466 1 33866592 33894308 Ssu1g1466 1 33866592 33894308 ECH