Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1461 ATGTTGAGTGGTACACTTTCAACCCCAACAACTCAAAGCCTCAAGGCAACAAGAACAATTGCAACGCTTTATCCAACTCACAGATCATTGTCTCTTAAGaaCCCAGTATCGAATACCAGAGGATTTTCGTCAAAGGAGAATTGTTTTATCAGAGGTCACCAAATCAACATCAAGCAATTTTTTGGGCTTATCTCGGGTCGTTCTCCACGAAACAAAGCAGGAGGAGTTGTTTCCCCAAGCTGTGTCCTGCCACTGACAGAAGAGAATGTAGAGAAGGTTTTGGATGAGGTAAGGCCTGGCTTGATGGCTGATGGAGGAAATGTGGCATTACATGAGATAGATGGTCTTGTTGTTGTCCTCAAACTACAAGGGGCATGTGGATCATGTCCTAGCTCAACTATGACATTGAAAATGGGAATTGAAACTCGCCTCCGGGATAAGATTCCAGAAATCATGGCAGTGGAGCAGATACTGGACACCGAGACCGGTCTCGAGTTAActgaagaaaatgttgaaagTGTTCTTTCTGAAATTAGACCATACCTTGTTGGCACTGGGGGAGGAATATTAGAGCTCGTTCAGATCAATGATTATGTAGTCAAAGTTCGGCTAAGTGGACCTGCAGCTGGGGTTATGACAGTTCGTGTTGCCTTAACACAGAAACTGAGAGACAAGATACCTTCTATTGCGGCTGTGCAACTAGTAGACTGA 711 0.4332 MLSGTLSTPTTQSLKATRTIATLYPTHRSLSLKNPVSNTRGFSSKENCFIRGHQINIKQFFGLISGRSPRNKAGGVVSPSCVLPLTEENVEKVLDEVRPGLMADGGNVALHEIDGLVVVLKLQGACGSCPSSTMTLKMGIETRLRDKIPEIMAVEQILDTETGLELTEENVESVLSEIRPYLVGTGGGILELVQINDYVVKVRLSGPAAGVMTVRVALTQKLRDKIPSIAAVQLVD 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1461 236 SUPERFAMILY Fe-S cluster assembly (FSCA) domain-like 87 161 IPR034904 -
Ssu1g1461 236 Pfam NifU-like domain 90 155 IPR001075 GO:0005506|GO:0016226|GO:0051536
Ssu1g1461 236 Pfam NifU-like domain 171 233 IPR001075 GO:0005506|GO:0016226|GO:0051536
Ssu1g1461 236 Gene3D - 165 236 IPR034904 -
Ssu1g1461 236 SUPERFAMILY Fe-S cluster assembly (FSCA) domain-like 165 235 IPR034904 -
Ssu1g1461 236 Gene3D - 82 164 IPR034904 -
Ssu1g1461 236 PANTHER IRON-SULFUR CLUSTER SCAFFOLD PROTEIN NFU-RELATED 19 236 - -
Ssu1g1461 236 PANTHER NIFU-LIKE PROTEIN 3, CHLOROPLASTIC 19 236 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1461 Ssu-Chr1 33719863 33721476 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1461 - - gmx:100806364 411.764