Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1452 ATGGAAGGTACCCTCTTCCCCAATAGGCCAGTTTTGCCTGCTCCTGCTCCTGCACCCAAGCCCACACAACCTTTGAAATTCAAGCCAAAATTTTTGCCTCCACAatctccaccaccacctccttCTTTTCAATTGGATTCCCTTCTCCAACGTCTTCAGCATCTCTCTTCAGTTCCCATCACCACTCACACCCTCACACTTGTGCCTCCTTCTCATGATAACAGCACCCATTTTAATTCCCTTCATTCAAAGCACCCCACTTCAGCTTCTGCCCCCATAACTGATGGggaccaatttgatgattcaaagtttgaatttttatcaGACAAAAGTAAGTTGATGCTCAATTCAATTGTTGGGTCACCTTTGCATGAATTGAGTGATTTTTTCAACTCTGTTAAGTTTGAGTTGCTTGAGGTTGATTTTCCCGGCCTGTTGAAAGCTTTGGACCTTTCTGGGAACTGGGAAAGGGCACTTTTGCTGTTTGAATGGGGTTGGTTGCATTTTGGGAGTGGTCAAAATATGAGGTTGGACAATCAGGTTGTTGAATTGATGGTTAGAATATTGGGGAGAGAGTCACAGTATTCAATTGCGTCCAAGCTGTTTGATTTAATTGCTGTGGAAGAGTACTCACTTGATATCCGGGCTTACACTACTATTCTTCATGCGCATGCTCGTGCGGGCAAGTATAAACGGGCTATTGACATGTTTGAGAAGATGAAGGAGAACGGTCTTGATCCAACTTTGGTCACTTACAATGTTATGCTTGATGTTTATGGCAAGATGGGTCGATCTTGGATTAGAATCTTGGAGTTGTTGGATGAGATGAGGAGTAAAGGGCTTAAGTTTGATGAGTTTACTTGCAGCACTGTGATCTCTGCTTGTGGGAGAGAGGGCATGCTGGATGAAGCAAGGAAGTTCTTGGCTGAATTGAAATCGAATGGCTATAAACCAGGAACTGTGGCGTATAATTCTATGCTGCAGGTTTTTGGAAAGGCTGGAATTTACACCGAGGTCTTGAACATCTTGAAAGAAATGGAGGATAATAATTGCCCTCCTGATTCTGTTACTTACAATGAGCTTGCGGCAACATATGTAAGAGCTGGGTTTCTTGACAAAGGGACGGCTGTCATAGATACAATGACAAGCAAAGGAATAATGCCAAATGCGATTACGTATACCACTGTAATAGATGCCTATGGTAAGGCAGGAAGGGAGGACGAGGCGTTAAAGTTGTTTGGCCAGATGAAGGACTTGGGTTGTGCTCCCAATGTATGCACATACAACTCTGTTCTTGCCATGCTAGGCAAGAAGTCAAGAACAGAAGATATTATTAAGGTTCTCTGTGAGATGAAATTGAATGGATGTGCTCCTAATCGCGCAACGTGGAACACTATGCTTGCTGTATGCAGCGAGGAGGGTAAGCACAATTATGTTAATAAGGTCTTAAGGGCAATGAAAAACTCTGGATTTGAGCCTGACAAAGACACATTCAATACATTGATTAGTGCATATGCTCGGTGTGGATCTGAAGTTTATTCTGCTAAAATGTATGGGGAAATGGTTAAAGCAGGCTTTACTCCATGTGTAACGACTTATAATGCTCTTCTAAATGCCCTTGCTTGGCGAGGTGATTGGAAAGCGGCAGAATCTGTCATTCTGGACATGCAGGGTAAGGGCTTTAAGCCTAATGAAACTTCATACTCATTGTTGCTCCATTGTTATTCCAAGGCTGGGAATGTCAAGGGGATAGAGAaggttgagaaagaaatttatGATGGTCATCTCTTTCCTAGTTGGATACTTTTGAGAACCCTTGTCCTATCAAACCACAAGTGTAGACACCTTAGGGGAATGGAAAGGGCATTTGATCAATTGCAAAAGCATGGATACAAACCTGATTTGGTTGTCATTAACTCCATGCTTTCAATGTTTGCCCGAAACAAAATGTTTGCGAAGGCCCGCGAAATGCTGCATTTTATTCACGAAAATGGATTGCAGCCAAATCTTTTCACCTATAATAGCTTGATGGATCTGTATGTCCGAGAGGGCGAGTGTTGGAAAGCAGAAGAAGTGCTCAAGGGAATTCAAAACTCAGGTCCAAAGCCAGATGTTGTGTCTTATAATACTGTTATCAAGGGATTTTGTAGAAAAGGGCTCATGCAGGAGGCTATTAGAGTTCTCTCAGAGATGACCACTAAAGGGATTCAACCAAGTATAGTTACATACAATACTTTCTTGTCAGGCTATGTAGGGATGGAGTTGTTTGATGAAGCAAATGAAGTCATTAGATTTATGATTGAGCACAATTGCACGCCCACTGAACTAACTTACAAGATTGTAGTTGATGGTTATTGTAAAGCAGGGAAACATGAAGAAGCTATGGACTTTGTGTCCAAGATTAAGGAGATTGATATCTCTTTTGATGATCGATCTGTGAAAAGACTAGGTTCTTGTATTAAGGAGAGAGTGGGGTCTACTTTGTGA 2487 0.4101 MEGTLFPNRPVLPAPAPAPKPTQPLKFKPKFLPPQSPPPPPSFQLDSLLQRLQHLSSVPITTHTLTLVPPSHDNSTHFNSLHSKHPTSASAPITDGDQFDDSKFEFLSDKSKLMLNSIVGSPLHELSDFFNSVKFELLEVDFPGLLKALDLSGNWERALLLFEWGWLHFGSGQNMRLDNQVVELMVRILGRESQYSIASKLFDLIAVEEYSLDIRAYTTILHAHARAGKYKRAIDMFEKMKENGLDPTLVTYNVMLDVYGKMGRSWIRILELLDEMRSKGLKFDEFTCSTVISACGREGMLDEARKFLAELKSNGYKPGTVAYNSMLQVFGKAGIYTEVLNILKEMEDNNCPPDSVTYNELAATYVRAGFLDKGTAVIDTMTSKGIMPNAITYTTVIDAYGKAGREDEALKLFGQMKDLGCAPNVCTYNSVLAMLGKKSRTEDIIKVLCEMKLNGCAPNRATWNTMLAVCSEEGKHNYVNKVLRAMKNSGFEPDKDTFNTLISAYARCGSEVYSAKMYGEMVKAGFTPCVTTYNALLNALAWRGDWKAAESVILDMQGKGFKPNETSYSLLLHCYSKAGNVKGIEKVEKEIYDGHLFPSWILLRTLVLSNHKCRHLRGMERAFDQLQKHGYKPDLVVINSMLSMFARNKMFAKAREMLHFIHENGLQPNLFTYNSLMDLYVREGECWKAEEVLKGIQNSGPKPDVVSYNTVIKGFCRKGLMQEAIRVLSEMTTKGIQPSIVTYNTFLSGYVGMELFDEANEVIRFMIEHNCTPTELTYKIVVDGYCKAGKHEEAMDFVSKIKEIDISFDDRSVKRLGSCIKERVGSTL 828
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1452 828 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 459 493 IPR002885 -
Ssu1g1452 828 Pfam PPR repeat family 528 576 IPR002885 -
Ssu1g1452 828 Pfam PPR repeat family 703 750 IPR002885 -
Ssu1g1452 828 Pfam PPR repeat family 318 359 IPR002885 -
Ssu1g1452 828 Pfam PPR repeat family 458 507 IPR002885 -
Ssu1g1452 828 PANTHER OS03G0856100 PROTEIN 1 822 - -
Ssu1g1452 828 Pfam PPR repeat 286 315 IPR002885 -
Ssu1g1452 828 Gene3D Tetratricopeptide repeat domain 265 380 IPR011990 GO:0005515
Ssu1g1452 828 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 424 458 IPR002885 -
Ssu1g1452 828 MobiDBLite consensus disorder prediction 1 42 - -
Ssu1g1452 828 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 389 423 IPR002885 -
Ssu1g1452 828 Gene3D Tetratricopeptide repeat domain 468 596 IPR011990 GO:0005515
Ssu1g1452 828 Gene3D Tetratricopeptide repeat domain 699 824 IPR011990 GO:0005515
Ssu1g1452 828 Gene3D Tetratricopeptide repeat domain 115 264 IPR011990 GO:0005515
Ssu1g1452 828 Pfam PPR repeat 770 800 IPR002885 -
Ssu1g1452 828 TIGRFAM PPR: pentatricopeptide repeat domain 706 739 IPR002885 -
Ssu1g1452 828 TIGRFAM PPR: pentatricopeptide repeat domain 532 565 IPR002885 -
Ssu1g1452 828 TIGRFAM PPR: pentatricopeptide repeat domain 216 248 IPR002885 -
Ssu1g1452 828 TIGRFAM PPR: pentatricopeptide repeat domain 777 803 IPR002885 -
Ssu1g1452 828 TIGRFAM PPR: pentatricopeptide repeat domain 636 669 IPR002885 -
Ssu1g1452 828 TIGRFAM PPR: pentatricopeptide repeat domain 497 528 IPR002885 -
Ssu1g1452 828 TIGRFAM PPR: pentatricopeptide repeat domain 286 319 IPR002885 -
Ssu1g1452 828 TIGRFAM PPR: pentatricopeptide repeat domain 426 459 IPR002885 -
Ssu1g1452 828 TIGRFAM PPR: pentatricopeptide repeat domain 321 355 IPR002885 -
Ssu1g1452 828 TIGRFAM PPR: pentatricopeptide repeat domain 741 775 IPR002885 -
Ssu1g1452 828 TIGRFAM PPR: pentatricopeptide repeat domain 250 284 IPR002885 -
Ssu1g1452 828 TIGRFAM PPR: pentatricopeptide repeat domain 671 705 IPR002885 -
Ssu1g1452 828 TIGRFAM PPR: pentatricopeptide repeat domain 391 425 IPR002885 -
Ssu1g1452 828 TIGRFAM PPR: pentatricopeptide repeat domain 462 494 IPR002885 -
Ssu1g1452 828 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 704 738 IPR002885 -
Ssu1g1452 828 Gene3D Tetratricopeptide repeat domain 381 454 IPR011990 GO:0005515
Ssu1g1452 828 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 739 773 IPR002885 -
Ssu1g1452 828 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 284 318 IPR002885 -
Ssu1g1452 828 MobiDBLite consensus disorder prediction 10 42 - -
Ssu1g1452 828 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 354 388 IPR002885 -
Ssu1g1452 828 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 319 353 IPR002885 -
Ssu1g1452 828 MobiDBLite consensus disorder prediction 75 95 - -
Ssu1g1452 828 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 213 247 IPR002885 -
Ssu1g1452 828 Gene3D Tetratricopeptide repeat domain 600 698 IPR011990 GO:0005515
Ssu1g1452 828 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 669 703 IPR002885 -
Ssu1g1452 828 MobiDBLite consensus disorder prediction 75 96 - -
Ssu1g1452 828 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 634 668 IPR002885 -
Ssu1g1452 828 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 494 528 IPR002885 -
Ssu1g1452 828 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 248 283 IPR002885 -
Ssu1g1452 828 Pfam Pentatricopeptide repeat domain 623 681 IPR002885 -
Ssu1g1452 828 Pfam Pentatricopeptide repeat domain 211 262 IPR002885 -
Ssu1g1452 828 Pfam Pentatricopeptide repeat domain 377 437 IPR002885 -
Ssu1g1452 828 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 529 563 IPR002885 -
Ssu1g1452 828 PANTHER - 1 822 - -
Ssu1g1452 828 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 774 808 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1452 Ssu-Chr1 33527350 33529836 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1452 241 809 Glycosyltransferase AT1G05670 22.902 2.60e-46 175
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1452 K17710 - gmx:100803889 1447.18