Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1416 ATGGCAGCATCATTGGCATGTCTTGTTGGGAGTGGTTTATGTACACAGAGTAATAAAATAACTCTTGGTAAGGACTTCAATGGAAGATATCTCTTCTCATCTCATAGGCTTTCAGCATTGAGTAAGGAATCAAAGACAATATCCTTAAAGGCATCCTTGGATCAAAAGAAGCATGAAGGGAGAAGAGGATTTCTGAAATTGTTGAATGTGGGAGTTGGCATACCTGTGTTATTAGGAAGTGAGAAAGCTTATGCTGATGAACAAGGGGTTTCCTCCTCCAGAATGTCTTATTCTAGTTTTCTTGAGTATTTGGATAAGGATAGAGTTAAAAAAGTGGATCTGTATGAGAATGGAACCACTGCTATTGTGGAGGCTGTTTCTCCTGAGTTGGGTAATAGGGTGCAGCGAGTGCGTGTTCAACTTCCTGGACTTAGCCAAGAGCTTCTTCAGAAATTCAGGGAAAAGAACATTGACTTTGCAGCTCATAATGGCCAAGAAGAGTCAGGTTCTCCGTTAGCTAACCTGATTGGGAACCTGGCTTTccctctaattttgattggaggaTTGTTCCTTCTCTCAAGACGATCATCAGGAGGGATGGGAGGTCCCGGTGGCCCAGGCTTTCCTCTTGCTTTTGGTCAATCTAAAGCCAAGTTTCAAATGGAGCCTAATACTGGAGTGACATTTGATGACGTTGCCGGTGTGGATGAAGCCAAGCAGGATTTTATGGAGGTGGTGGAGTTTCTTAAGAAGCCTGAGAGGTTCACTGCTGTTGGGGCATGCATACCAAAGGGTGTTCTTCTTGTTGGTCCTCCTGGAACTGGGAAGACACTTTTAGCAAAGGCTATTGCAGGTGAAGCAGGTGTCCCATTTTTCTCGATTTCTGGTTCTGAGTTTGTAGAGATGTTTGTTGGTGTTGGGGCTTCTCGAGTCCGTGATTTATTCAAGAAGGCCAAAGAGAATGCTCCCTGCATTGtttttgttgatgaaattgATGCTGTTGGAAGGCAAAGAGGTACTGGAATTGGTGGAGGGAATGATGAAAGAGAACAGACCCTCAACCAACTTTTGACAGAAATGGATGGATTTGAGGGTAATACTGGTATCATTGTCATTGCAGCTACTAACAGGGCTGACATTCTTGATTCTGCATTGTTGAGGCCAGGACGGTTTGATAGACAGGTAACAGTTGATGTTCCAGATATACGGGGAAGGACTGAAATTCTAAAGGTTCATGGTAGCAATAAAAAGTTTGATGCTGATGTTTCACTTGAGATAATTGCAATGAGAACACCTGGTTTTAGTGGAGCTGATCTTGCAAATCTGTTGAATGAAGCTGCTATCTTAGCTGGTCGGCGTGGAAAGACAGCAATTTCATCCAAAGAGATTGATGATTCTATTGATAGGATTGTGGCTGGAATGGAAGGAACAGTGATGACAGATGGGAAGAGCAAAAGCTTAGTGGCATATCATGAAGTTGGGCATGCTATTTGTGGAACTTTGACTCCTGGTCATGATCCTGTACAAAAAGTAACCTTGGTTCCTCGCGGGCAAGCTCGAGGTCTTACTTGGTTCATTCCTGCTGATGACCCAACTCTGATCTCCAAACAACAACTCTTTGCAAGAATTGTTGGTGGACTAGGTGGCAGAGCAGCAGAGGAGGTCATTTTTGGTGAGCCTGAGGTTACAACTGGAGCAGCTGGCGATTTGCAGCAAATAACCAGTTTGGCCAAACAGATGGTAACCACATTTGGAATGTCTGATATTGGTCCTTGGTCACTCATGGACTCATCAGCTCAAAGTGCAGATGTCATCATGAGAATGATGGCAAGAAACTCAATGTCAGAAAAACTTGCTGAAGACATTGATGCTGCTGTCAAGAGGATCTCAGATGAAGCATATGAAATTGCATTGAGCCATATAAGGAACAACCGCGAGGCGATTGATAAGATTGTGGAAGTTCTACTGGAGAAGGAGACAATGGCTGGAGATGAATTCCGAGCTCTCCTGTCCTGA 2016 0.4311 MAASLACLVGSGLCTQSNKITLGKDFNGRYLFSSHRLSALSKESKTISLKASLDQKKHEGRRGFLKLLNVGVGIPVLLGSEKAYADEQGVSSSRMSYSSFLEYLDKDRVKKVDLYENGTTAIVEAVSPELGNRVQRVRVQLPGLSQELLQKFREKNIDFAAHNGQEESGSPLANLIGNLAFPLILIGGLFLLSRRSSGGMGGPGGPGFPLAFGQSKAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAVGACIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLEIIAMRTPGFSGADLANLLNEAAILAGRRGKTAISSKEIDDSIDRIVAGMEGTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPADDPTLISKQQLFARIVGGLGGRAAEEVIFGEPEVTTGAAGDLQQITSLAKQMVTTFGMSDIGPWSLMDSSAQSADVIMRMMARNSMSEKLAEDIDAAVKRISDEAYEIALSHIRNNREAIDKIVEVLLEKETMAGDEFRALLS 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1416 671 Gene3D - 400 475 - -
Ssu1g1416 671 Pfam ATPase family associated with various cellular activities (AAA) 266 397 IPR003959 GO:0005524|GO:0016887
Ssu1g1416 671 SMART AAA_5 262 401 IPR003593 -
Ssu1g1416 671 PANTHER ATP-DEPENDENT ZINC METALLOPROTEASE FTSH 2, CHLOROPLASTIC 4 671 - -
Ssu1g1416 671 Gene3D Peptidase M41 476 671 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Ssu1g1416 671 Pfam Peptidase family M41 480 668 IPR000642 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Ssu1g1416 671 Hamap ATP-dependent zinc metalloprotease FtsH [ftsH]. 29 671 IPR005936 GO:0004176|GO:0004222|GO:0016020
Ssu1g1416 671 Gene3D - 217 399 IPR027417 -
Ssu1g1416 671 CDD AAA 263 398 - -
Ssu1g1416 671 SUPERFAMILY FtsH protease domain-like 481 670 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Ssu1g1416 671 ProSitePatterns AAA-protein family signature. 369 387 IPR003960 GO:0005524|GO:0016887
Ssu1g1416 671 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 224 469 IPR027417 -
Ssu1g1416 671 TIGRFAM FtsH_fam: ATP-dependent metallopeptidase HflB 176 670 IPR005936 GO:0004176|GO:0004222|GO:0016020
Ssu1g1416 671 Pfam FtsH Extracellular 87 160 IPR011546 GO:0004176|GO:0004222|GO:0005524|GO:0008270|GO:0016021
Ssu1g1416 671 Gene3D - 89 168 - -
Ssu1g1416 671 Pfam AAA+ lid domain 421 464 IPR041569 -
Ssu1g1416 671 PANTHER METALLOPROTEASE M41 FTSH 4 671 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1416 Ssu-Chr1 31482855 31485551 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1416 220 670 Miscellaneous Gene Families AT5G53170 50.441 2.36e-137 420
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1416 K03798 - gmx:100795567 1162.52