Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1402 atgGAAGAAGAAGAGTGCGAAGTTGGCTCGAAGGAAACTCCTGTTCGAGTTTATGCTGATGGGATTTATGATCTCTTTCACTTCGGCCACGCCCGTTCTCTTGAGCAAGCCAAGAAACTGCTTCCAAACACTTATCTCCTTGTTGGATGCTGCAATGATGAGATCACCCATAAGTATAAGGGCAAAACTGTTATGACCGAGAAGGAACGCTATGAGTCTCTTCGCCACTGCAgGTGGGTTGATGAAGTTATTCCAGATGCGCCATGGGTAATCACTCAGGAGTTCCTTGACAAGCATCAAATTGACTATGTGGCACATGATAGTCTTCCTTATGCTGATGCAAGTGGAGCTGGAAAGGACGTGTATGAATATgTTAAGTCTGTTGGAAAATTTAAGGAAACAAAGCGGACTGAAGGAATATCTACTTCTGATATCATAATGAGAATTATCAAAGATTATAATCAATATGTAATGCGTAATTTGGACCGTGGTTATACAAGAAAGGAGCTAGGCGTCAGCTATGTCAAGGAGAAGAGGTTGAGAATGAACATGGGACTTAAAAAATTGCAGGAGAGAGTGAAGAAACAACAAGAGAAAGTGGGAAAGAAGATTCAAACGGTGGGAAAAATTGCTGGAATGCACCCTAATGAATTGGTTGAAAACGCTGATCGGTTGGTTGCTGGATTTCTTGAGATGTTTGAAGAAGGCTGCCACAAAATGGGAACAGCAATCAGAGACAGAATACGAGAACGATTAAGGGCACAGCAGCTGAAATCTCTTCTTTATGATGAGtgggatgatgatgatgaattcTATGATGATGAATACTACACTGACTAA 840 0.4024 MEEEECEVGSKETPVRVYADGIYDLFHFGHARSLEQAKKLLPNTYLLVGCCNDEITHKYKGKTVMTEKERYESLRHCRWVDEVIPDAPWVITQEFLDKHQIDYVAHDSLPYADASGAGKDVYEYVKSVGKFKETKRTEGISTSDIIMRIIKDYNQYVMRNLDRGYTRKELGVSYVKEKRLRMNMGLKKLQERVKKQQEKVGKKIQTVGKIAGMHPNELVENADRLVAGFLEMFEEGCHKMGTAIRDRIRERLRAQQLKSLLYDEWDDDDEFYDDEYYTD 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1402 279 Coils Coil 179 206 - -
Ssu1g1402 279 CDD CCT 14 164 IPR041723 -
Ssu1g1402 279 SUPERFAMILY Nucleotidylyl transferase 16 148 - -
Ssu1g1402 279 TIGRFAM cyt_tran_rel: cytidyltransferase-like domain 16 83 IPR004821 GO:0003824|GO:0009058
Ssu1g1402 279 Gene3D HUPs 1 234 IPR014729 -
Ssu1g1402 279 Pfam Cytidylyltransferase-like 18 147 IPR004821 GO:0003824|GO:0009058
Ssu1g1402 279 PANTHER CYTIDYLYLTRANSFERASE 4 275 IPR045049 GO:0004105|GO:0006657
Ssu1g1402 279 PANTHER CHOLINE-PHOSPHATE CYTIDYLYLTRANSFERASE 2-LIKE ISOFORM X1 4 275 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1402 Ssu-Chr1 31064245 31076346 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1402 34 277 Acyl Lipid Metabolism Gene Families AT2G32260 75.610 6.67e-133 375
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1402 K00968 - gmx:100786249 507.679