Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1400 ATGAGATTCTCAGTCTTAGCCATTCTCTTGTTATTGGTTGTAGAAGAAGCCACTTGCTTCAACAAACATACACCACTGTCTCATTTCAGGACCAAACTTAAGGATAGAATGGTCATTGCCCTGTCCCAACCACCCTTTGCATCTCCAGatacaaaaaatAGTGGCAGAGTGGTGTACCCAGTTGAGTATGGTGCAGACCCCACAGGGGCACAAGAGAGCAGTGATGCCATCCTGAAGGCAGTGGGAGATGCTTTTGGGTTGGAGAGTGGGCTTGAGATGCTGGCAGGAGTTAGAGACCTTGGAGGGGTTGTGATTGATCTGCAAGGTGGAAACTACACAATCAGCAAACCCATCACATTCCCTTCCTCTGGTGGTGGCAATGTTGTGGTAAAAGGAGGAACATTGAGAGCTACTGATTCATTCCCCACTGATCGGCATCTTGTTGAGTTAAGGGCATCAAATTCCCAAAAGCTTCCAAAAACATCAGTTTTCAGCAGCATGAAACTTCAGCAACCTAATGGGATTTACTATGAAGACATAACGTTTAGAGACATCCTCTTTGATTCTGGCTACAGGGGTGGAGGGATATTCGTTGTTGATTCTGCTAGAATAAGGATCAACAATTGCTTTTTCTTGCATTTCACCACAGAAGGGATTCTAGTTCAAGGTGGCCATGAGACCTTCATTTCAAGCTGTTTCCTTGGGCAGCACTCAACAGTTGGGGGAGACAAAGGGGAGAGGGACTTCTCTGGCACTGCCATTGATCTTGCCAGCAATGACAATGCAATCACGGATGTTGCAATTTTCTCTGCAGCCATAGGGATTGTCCTGAGGGGCCAGGCCAACATGGTCACAGGGGTGCATTGTTATAACAAGGCCACAGGTTTTGGTGGCATAGGCATCTTGGTGAAACTACCAGGAAATTCACAAACTAGAATTGATAACTGTTACATGGACTATACAGGAATAGTCATGGAGGATCCTGTTCAAGTTCATGTCACTAATGGGTTTTTCTTGGGAGATGCAAATATAGTTTTGAAGTCAATTAAAGGACAGGTTTCTGGTTTGAACATAGTTGATAATATGTTCACTGGGAACCCCAATAATAAGGTTCCAATCGTAAGTCTAGATGGGCAATTCAGTAACATTGATCAAGTGGTGACTGATAGGAACAATGTGATTGGCATGAGCTTGAGATCAACGGTTGGGAAGTTAACTGTGGCTGGAAATGGCACAAAGTGGGTGGCtgatttttcaaacattttgcTATTCCCCAATCGGATTAGTAATTTCCAGTATTCATTTTACGCACAAGGGGAGCCCAAGTTTTCGGCACATTCGGTGACCAATGTGACTAATAATGCTGTAGTTGTGGAAAGTGAGAAACCAGCTCAAGGGGTCGTTTCCTTCCTCGTTGAACAATGA 1425 0.4386 MRFSVLAILLLLVVEEATCFNKHTPLSHFRTKLKDRMVIALSQPPFASPDTKNSGRVVYPVEYGADPTGAQESSDAILKAVGDAFGLESGLEMLAGVRDLGGVVIDLQGGNYTISKPITFPSSGGGNVVVKGGTLRATDSFPTDRHLVELRASNSQKLPKTSVFSSMKLQQPNGIYYEDITFRDILFDSGYRGGGIFVVDSARIRINNCFFLHFTTEGILVQGGHETFISSCFLGQHSTVGGDKGERDFSGTAIDLASNDNAITDVAIFSAAIGIVLRGQANMVTGVHCYNKATGFGGIGILVKLPGNSQTRIDNCYMDYTGIVMEDPVQVHVTNGFFLGDANIVLKSIKGQVSGLNIVDNMFTGNPNNKVPIVSLDGQFSNIDQVVTDRNNVIGMSLRSTVGKLTVAGNGTKWVADFSNILLFPNRISNFQYSFYAQGEPKFSAHSVTNVTNNAVVVESEKPAQGVVSFLVEQ 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1400 474 Gene3D - 61 467 IPR012334 -
Ssu1g1400 474 PANTHER POLYGALACTURONASE QRT3-LIKE PROTEIN 1 474 - -
Ssu1g1400 474 PANTHER POLYGALACTURONASE QRT3 1 474 IPR039279 GO:0004650
Ssu1g1400 474 SUPERFAMILY Pectin lyase-like 75 436 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1400 Ssu-Chr1 31033090 31038521 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1400 - - gmx:100802482 821.617