Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1395 ATGGCTATTAGCTTTCGGCATCCGTGTCTTTATAAAGGCTCATGGGGAACATGCAGAGAGAGTGAGAGACAACCAATTCAAAAGCGTATAAAGGGGAAGCATCTTAAAGAGGGGGAGCAACACAGTTACATCTACCACTTTAATGCCTGTAGTGGCAGAGTGGTGTACCCAGTTGAGTATGGTGCAGACCCCACAGGGGCACAAGAGAGCAGTGATGCCATCCTGAAGGCAGTGGGAGATGCTTTTGGGTTGGAGAGTGGGCTTGAGATGCTGGCAGGAGTTAGAGACCTTGGAGGGGTTGTGATTGATCTGCAAGGTGGAAACTACACAATCAGCAAACCCATCACATTCCCTTCCTCTGGTGGTGGCAATGTTGTGGTAAAAGGAGGAACATTGAGAGCTACTGATTCATTCCCCACTGATCGGCATCTTGTTGAGTTAAGGGCATCAAATTCCCAAAAGCTTCCAAAAACATCAGTTTTCAGCAGCATGAAACTTCAGCAACCTAATGGGATTTACTATGAAGACATAACGTTTAGAGACATCCTCTTTGATTCTGGCTACAGGGGTGGAGGGATATTCGTTGTTGATTCTGCTAGAATAAGGATCAACAATTGCTTTTTCTTGCATTTCACCACAGAAGGGATTCTAGTTCAAGGTGGCCATGAGACCTTCATTTCAAGCTGTTTCCTTGGGCAGCACTCAACAGTTGGGGGAGACAAAGGGAGAGGGACTTCTCTGGCACTGCCATTGATCTTGCCAGCATGA 768 0.4661 MAISFRHPCLYKGSWGTCRESERQPIQKRIKGKHLKEGEQHSYIYHFNACSGRVVYPVEYGADPTGAQESSDAILKAVGDAFGLESGLEMLAGVRDLGGVVIDLQGGNYTISKPITFPSSGGGNVVVKGGTLRATDSFPTDRHLVELRASNSQKLPKTSVFSSMKLQQPNGIYYEDITFRDILFDSGYRGGGIFVVDSARIRINNCFFLHFTTEGILVQGGHETFISSCFLGQHSTVGGDKGRGTSLALPLILPA 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1395 255 PANTHER POLYGALACTURONASE QRT3-LIKE PROTEIN 50 243 - -
Ssu1g1395 255 PANTHER POLYGALACTURONASE QRT3 50 243 IPR039279 GO:0004650
Ssu1g1395 255 Gene3D - 58 246 IPR012334 -
Ssu1g1395 255 SUPERFAMILY Pectin lyase-like 49 230 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1395 Ssu-Chr1 30956354 30960690 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1395 - - gmx:100802482 342.428