Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1390 ATGTCATTATTGGCTAAACTACGCTGTGTCACTATAGATGTTACCGGTACCCTAATGGCTTACAAAGGGGAACTTGGTGACTATTATTGCATGGCAGCCAAAGCTGCAGGCCTTCCATGCCCAGACTACAAACGTGTGCACGAGGGCTTTAAGCTTGCATATAAGGACATGGCAAAGAAGTATCCATGTTTTGGGTATGCAGCCAAAATGCCAAACATTGTGTGGTGGAAAACCTGTGTGCGAGATTCTTTTGTCAGGGCTGGATATGATTATGATGAGGAGACATTTGAGAAAATCTTCAGACGTATATATGCATCCTTTGGTTCATCTGCTCCATATACTGTATTTCCAGACTCCCAACCATTTCTTAGATGGCTACGTGGAAAGGGTCTCAAAGTTGGTATTGTGAGCAATGCAGAGTATCGATATCAAGATGTGATTCTTCCAGCTTTCGGTTTAAACGAGGGATCTGAGTGGGACTTTGGTGTGTTTTCCGGTATTGAAGGCGTTGAGAAACCAAACCCGAAAATTTATGAGATTGCACTTGAGAGGGCTGGAAATATTGCACCTGAAGAAGCTTTGCATATCGGGGACAGCATGCGCAAAGACTATGAGCCAGCTAAGAGCATAGGGATGCATGCACTATTGTTAGATAGATTTAAGACACCAGATGCTGTGGAATGGAGGAAATCCGGGGCAGTTGTTCTTCCTGAATTATTGGCAGTACAAGAATGGTTGTCTTCAGATAAGTCAAATTGCTAG 762 0.4344 MSLLAKLRCVTIDVTGTLMAYKGELGDYYCMAAKAAGLPCPDYKRVHEGFKLAYKDMAKKYPCFGYAAKMPNIVWWKTCVRDSFVRAGYDYDEETFEKIFRRIYASFGSSAPYTVFPDSQPFLRWLRGKGLKVGIVSNAEYRYQDVILPAFGLNEGSEWDFGVFSGIEGVEKPNPKIYEIALERAGNIAPEEALHIGDSMRKDYEPAKSIGMHALLLDRFKTPDAVEWRKSGAVVLPELLAVQEWLSSDKSNC 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1390 253 TIGRFAM HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 128 211 IPR006439 -
Ssu1g1390 253 CDD HAD_dREG-2_like 119 227 - -
Ssu1g1390 253 TIGRFAM DREG-2: HAD hydrolase, REG-2-like, family IA 8 216 IPR011949 -
Ssu1g1390 253 SUPERFAMILY HAD-like 7 246 IPR036412 -
Ssu1g1390 253 Pfam haloacid dehalogenase-like hydrolase 8 210 - -
Ssu1g1390 253 Gene3D - 23 108 IPR044924 -
Ssu1g1390 253 Gene3D - 10 221 IPR023214 -
Ssu1g1390 253 PANTHER OS02G0173600 PROTEIN 1 252 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1390 Ssu-Chr1 30829963 30831590 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1390 - - gmx:100815659 508.064