Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1385 ATGCTCGCCGCGGGCGCGCCCCCCGACAACTTCGCCTTCCCCGCCGCCCTCAAGTCCGCCGCCGCCGTCCGCGACCTCGACTTGGGGAAACAAATCCACGCGCACGTCTTCAAGTTCGGCTACGCGCCGCCCTCCTCCGTCGCCGTGGCCAACTCCCTTGTCAACATGTACGGCAAATGCGGCGACCTCCGCTCCGCGCGCCGCGTGTTCGACGAAATTCCCGAGCGAGACCACGTGTCGTGGAACTCCATGATCGCAACACTCTGTCGGTTCGAGGAGTGGGAGCTGTCCCTAAATTTGTTCCGGTTAATGTTGTCGGAAAAAGCGGACCCCACGTCGTTCACGCTGGTCAGTGTGGCACACGCGTGCCCGCACGTGCGCGGCGGCGTGCGGCTCGGGAAGCAAGTGCACGCTTATACTTTGAGGAACGGGGATTGGAGAACGTACACCAGCAATGCGTTGGTGACAATGTATGCAAAATTGGGGAGAATGAACGATGCTAAGGCATTGTTTGATGTGTTTGATGATAAGGACATGGTGTCTTGGAACACTATTATTAGCTCGCTTTCTCAGAATGATAGCTTTGAGGAAGCGTTGATGTATATGTACCTTATGATTGTTGATGGGGTTAGGCCTGACGGGGTTACACTGGCGAGTGTTTTGCCGGCTTGTTCACAACTTGAGAGGTTGAGAATTGGGAGGGAGATTCATTGCTATGCGTTGAGGAATGGGGATTTGATTGAGAATTCGTTCGTTGGGACTGCGCTGGTTGACATGTATTGTAATTGCAAGCAGGCTGAGAAGGGTGGGTTGGTTTTTGATAGGGTGCTGAGGAGGACGGTGGCGGTTTGGAATGCTATGCTTGCTGGTTATGCGCGGAATGAGTTTGATGATGAGGCTTTGAGGCTGTTTATTGAGATGGTTTCTGAGTCAGAGTTTTGTCCCAATGCCACCACGTTGTCGAGTGTTTTGCCTGCTTGTATGCGTTGTGAGGCATTTTTGGACAAAGAAGGTGTCCATGGCTACATTGTGAAGAGGGGATTTGGGAGGGATAAGTATGTGCAAAATGCGCTGATGGACATGTATTCCAGGATGGGAAGGATTGAAATTGCGAAGAGGATATTTGGTGGGATGGATAGAAGGGATATAGTGTCTTGGAACACGATGATCACTGGCTGTGTTGTTTGTGGGTGCCATGATGATGCGCTTAATCTTCTGCTTGAGATGCAGAGAGGTGAAGGAGAAGATGGGAGTGTCACATTTGTTGATTGGGTGAGAAAAGTTCAGTTGAGATCACGTATCATTGCAACTGCATAG 1317 0.5156 MLAAGAPPDNFAFPAALKSAAAVRDLDLGKQIHAHVFKFGYAPPSSVAVANSLVNMYGKCGDLRSARRVFDEIPERDHVSWNSMIATLCRFEEWELSLNLFRLMLSEKADPTSFTLVSVAHACPHVRGGVRLGKQVHAYTLRNGDWRTYTSNALVTMYAKLGRMNDAKALFDVFDDKDMVSWNTIISSLSQNDSFEEALMYMYLMIVDGVRPDGVTLASVLPACSQLERLRIGREIHCYALRNGDLIENSFVGTALVDMYCNCKQAEKGGLVFDRVLRRTVAVWNAMLAGYARNEFDDEALRLFIEMVSESEFCPNATTLSSVLPACMRCEAFLDKEGVHGYIVKRGFGRDKYVQNALMDMYSRMGRIEIAKRIFGGMDRRDIVSWNTMITGCVVCGCHDDALNLLLEMQRGEGEDGSVTFVDWVRKVQLRSRIIATA 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1385 438 PANTHER OS04G0118700 PROTEIN 167 281 - -
Ssu1g1385 438 PANTHER OS04G0118700 PROTEIN 1 173 - -
Ssu1g1385 438 TIGRFAM PPR: pentatricopeptide repeat domain 283 317 IPR002885 -
Ssu1g1385 438 TIGRFAM PPR: pentatricopeptide repeat domain 384 411 IPR002885 -
Ssu1g1385 438 TIGRFAM PPR: pentatricopeptide repeat domain 354 384 IPR002885 -
Ssu1g1385 438 TIGRFAM PPR: pentatricopeptide repeat domain 51 78 IPR002885 -
Ssu1g1385 438 TIGRFAM PPR: pentatricopeptide repeat domain 180 213 IPR002885 -
Ssu1g1385 438 TIGRFAM PPR: pentatricopeptide repeat domain 79 111 IPR002885 -
Ssu1g1385 438 PANTHER OS04G0118700 PROTEIN 275 416 - -
Ssu1g1385 438 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 46 76 IPR002885 -
Ssu1g1385 438 Pfam PPR repeat 384 411 IPR002885 -
Ssu1g1385 438 Pfam PPR repeat 356 383 IPR002885 -
Ssu1g1385 438 Pfam PPR repeat 150 172 IPR002885 -
Ssu1g1385 438 Pfam PPR repeat 51 76 IPR002885 -
Ssu1g1385 438 Pfam PPR repeat 79 107 IPR002885 -
Ssu1g1385 438 Pfam PPR repeat 283 310 IPR002885 -
Ssu1g1385 438 Pfam PPR repeat 180 210 IPR002885 -
Ssu1g1385 438 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 178 212 IPR002885 -
Ssu1g1385 438 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 77 111 IPR002885 -
Ssu1g1385 438 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 382 412 IPR002885 -
Ssu1g1385 438 Gene3D Tetratricopeptide repeat domain 339 426 IPR011990 GO:0005515
Ssu1g1385 438 Gene3D Tetratricopeptide repeat domain 236 338 IPR011990 GO:0005515
Ssu1g1385 438 Gene3D Tetratricopeptide repeat domain 143 235 IPR011990 GO:0005515
Ssu1g1385 438 Gene3D Tetratricopeptide repeat domain 1 142 IPR011990 GO:0005515
Ssu1g1385 438 PANTHER OS07G0578800 PROTEIN-RELATED 275 416 IPR045215 GO:0003723|GO:0009451
Ssu1g1385 438 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 280 315 IPR002885 -
Ssu1g1385 438 PANTHER OS07G0578800 PROTEIN-RELATED 167 281 IPR045215 GO:0003723|GO:0009451
Ssu1g1385 438 PANTHER OS07G0578800 PROTEIN-RELATED 1 173 IPR045215 GO:0003723|GO:0009451
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1385 Ssu-Chr1 30698711 30701313 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1385 7 428 Glycoside Hydrolase AT3G49170 29.630 2.05e-52 186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1385 - - gmx:102670454 753.821