Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1383 ATGAAACGGTGCGTGGCTGTGGTGTTTGCGTTGTGGTTGGTCCTTGTTGATTCGCGGCTTGTGGTGAAGAAGAGCAGCATCACGGTTCTGTCACCGCACAAGCTGAGGACGAAGCGCGATGGCGCCATCGCTGACTTTGGTGTTCCGGCCCACGTAGGATTCATCGTTGGTTATGTCGTTTATCCCGAGGAAGGCTCGCACTGGTGTCAAGTCGTTGAGGGTTATAGGCTCTTCAAGTTTCGGCCTCATCGCCCCACTATTGTTCTCCTTGATCGTGGAGAGTGTTATTTTGCCTTGAAGGTTTGGCATGCCCAACTGGCTGGTGCTGCGGCGGTTTTGGTGACTGACAGCATTGATGAGTCTCTGATAACCATGGATTCCCCTGAGGAGAGCTCTGATGCGGATGGCTACATAGAGAAGGTTGAGATTCCATCAGCTCTGATAGAGAAATCCTTTGGTGATATGTTGAAGGAAGCTTTGAATAACAAAGATGAAGTTCTGCTAAGAATTGACTGGAGAGAGTCCGTACCTCACCCTGATAGCAGGGTTGAGTATGAGTTCTGGACCAACAGTAATGATGAGTGTGGAGCTCGTTGTGACGAACAGATGAATTTTGTGAAGAATTTCAAGGGTCATGCTCAGATTCTTGAGAGGGGTGGTTATACCTTGTTCACTCCACACTATATAACTTGGTTTTGTCCACCGCCCTTCATTCTTAGCAGTCAGTGCAAGTCCCAATGTATAAACCGTGGGAGATATTGTGCCCCGGATCCGGAGAAGGATTTTGGAGAGGGCTATGAAGGGAAGGATGTGGTGTATGAAAATTTGAGGCAGCTGTGTGTCCATAGAATTGCCAATGAGAGCAACCGTTCATGGGTCTGGTGGGATTATGTGACAGATTTTCATGTCAGATGTTCTATGAAGGAGAAAAGATACACCAAAGATTGTGCTGAGGAGGTCATGAAATCCTTAGATCTTCCTATGGAGAAAATCAAGAAATGCATGGGTGATCCTGAGGCGGATGTGGAGAATGAAGTGCTAAAGAATGAGCAACTAGTCCagATCGGTAGAGGATCTCGCAGTGATGTCACCATCTTGCCAACATTGGTTATAAACAATGTCCAGTATAGAGGAAAATTGGAGAGAACTGCTGTACTGAAGGCCATATGTTCTGGATTTAAGGAGACTACTGAACCGTCAGTTTGTTTAACCGGAGATGTTGAGACTAATGAGTGTCTTGAAAGAAATGGAGGATGTTGGCAAGACAAAAAAGCTAACATAACTGCTTGCAAGGATACTTTCAGGGGAAGAGTTTGCGAGTGCCCTGTTTTGAACGGTGTTCAGTATAAGGGTGATGGTTATACAACATGTGAAGCTTTTGGACCTGCAAGGTGTTCTATAAACAATGGAGGTTGTTGGTCGGAAACCAAAAATGGACTAACTTTCTCAGCTTGCTCAGACTCCAAGGTAAACGGCTGTCAGTGCCCGGTTGGGTTTCGTGGGGATGGTTATAAATGCGAAGatattgatgaatgtaagGAACGAAGTGCTTGTCAGTGTGATGGCTGCAGCTGCAAGGACACTTGGGGTGGTTACGATTGTAAATGCAAAGGaaatcttctatatataaaggAACAAGATGTTTGTATTGAAAGAAGTGGATCAAGATTTGGACGGTTCTTTGCCTTTGTGGTCATAGCAGTTGTTGTGGGCGCGGGTCTAGCTGGTTACGTGTTCTACAAATATAGGCTCCGGTCTTACATGGACTCCGAGATCATGTCTATCATGTCACAATACATGCCACTGGACCAGCAAAATAATGTAGTTCATGCTGAAGCTCAGCCTTTACGACAACAAGGCACCGTGTAA 1869 0.4521 MKRCVAVVFALWLVLVDSRLVVKKSSITVLSPHKLRTKRDGAIADFGVPAHVGFIVGYVVYPEEGSHWCQVVEGYRLFKFRPHRPTIVLLDRGECYFALKVWHAQLAGAAAVLVTDSIDESLITMDSPEESSDADGYIEKVEIPSALIEKSFGDMLKEALNNKDEVLLRIDWRESVPHPDSRVEYEFWTNSNDECGARCDEQMNFVKNFKGHAQILERGGYTLFTPHYITWFCPPPFILSSQCKSQCINRGRYCAPDPEKDFGEGYEGKDVVYENLRQLCVHRIANESNRSWVWWDYVTDFHVRCSMKEKRYTKDCAEEVMKSLDLPMEKIKKCMGDPEADVENEVLKNEQLVQIGRGSRSDVTILPTLVINNVQYRGKLERTAVLKAICSGFKETTEPSVCLTGDVETNECLERNGGCWQDKKANITACKDTFRGRVCECPVLNGVQYKGDGYTTCEAFGPARCSINNGGCWSETKNGLTFSACSDSKVNGCQCPVGFRGDGYKCEDIDECKERSACQCDGCSCKDTWGGYDCKCKGNLLYIKEQDVCIERSGSRFGRFFAFVVIAVVVGAGLAGYVFYKYRLRSYMDSEIMSIMSQYMPLDQQNNVVHAEAQPLRQQGTV 622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1383 622 PANTHER EGF-LIKE CALCIUM-BINDING DOMAIN, PA DOMAIN-CONTAINING PROTEIN-RELATED 11 598 - -
Ssu1g1383 622 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 11 598 - -
Ssu1g1383 622 Gene3D Laminin 402 458 - -
Ssu1g1383 622 Pfam PA domain 81 155 IPR003137 -
Ssu1g1383 622 Gene3D - 17 179 - -
Ssu1g1383 622 SMART egfca_6 508 550 IPR001881 GO:0005509
Ssu1g1383 622 Gene3D Laminin 462 550 - -
Ssu1g1383 622 ProSitePatterns Calcium-binding EGF-like domain signature. 508 534 IPR018097 GO:0005509
Ssu1g1383 622 SUPERFAMILY PA domain 84 162 IPR046450 -
Ssu1g1383 622 CDD EGF_CA 508 537 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1383 Ssu-Chr1 30542148 30570045 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1383 5 619 Miscellaneous Gene Families AT1G30900 69.692 0.0 946
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1383 - - pvu:PHAVU_009G243800g 1158.28