Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1378 ATGCCACAACCACGAGAGCTTCCGGGATTTTATTATGACCCTGAGAAGAACAGGTATTTCCCCATCAAAGGCCGCATTCCCGGCTCTTCTTCTAAGCCTAAGACCCCTACTCTTAAGCCACCCCAAACCCCTTCCAATCAGTTACAGGAAAGTGGTAGGAGTTGTTGTAGGAGGCTTAGAAACAGAACGTCTAAGCTGCTTCAGGCTAGGGAGTTGGATGGTCGCCATGTCATTGCCTCTCACTATTGCAAGCGTAACTTCGCAGAGGAGTTCCGGAAAATACAAGCATCTAAGCCTGTCGTCTGGAAATATCGGGGAACTGATAAGATGGGTATTAGTGCTTTGGAACACTTGCGTGTTGACGTGCAGACGCCGGAGGGGCAATCTGAAACTGATGTTTTGTTGACGGGCAGCATAAATGGCTCGCTGAGTTTTTCTGAAGTTGGAAGGGTTGGGAAATATTTTGATGGTGGGACAAAATGGATGGCAGATTGTGTGATGAATTATGTTAAAGAGAAAACAGTTGAGCGTAATGAGGTGCTTGGGCCGGTTTTCAGACCTAATCGAGCTGCACTGCTTATGCCCTCCAGAATATCTTGTATAAGATTGGGTCCAAAGTGCTCTTCTCACGCTGTGAATGATGGTCCTATTGTTGGACATGCATTATTTACTACTTTGGGATCAGATACATCAGGTGGATCAGTTTATACACTTCGTCTTGTTGAACCATTAGATCTTGGATCAGGTATACTGAACACATGGAGCAGACTAGAGGAAATTGCTTCTGTCAGGTGTACCCTTTGGACAGCAGAATATGATTATAATAGACAACGGGCTGTAATTGgTACAAATCTGGGAGGTGCTTCAGTGGATCTGGAAACTGGGATGACATCATGGTTTTTACATTGTAAAAGTGATGTTTTTGCACAACAGATTGTTAACTCAGGAAATGTGATTTTATGTGGGCTCAGAAATGGGGCAATTCTCACTGTAGATTTTcgtgagaaaagagaaaggctTTCTGATAGACTTATTACTCATCAAATACCTTGTACATCTTCAGATAAGAAAGTTGGAGGTTCTAATAAAGAATGGTTCAAgCTCAAAGGAGACATATATCCTTCTCACACTGTTAGGATGCCTTCATCTATATCCTGTTTGGTGTCACTTCAGTTTGATGAGCAGTACTTCTTTTCAAGCTCAATGGATGGATCGatGAGGCTTTATGATCGTCGTCTACTCCAGAGGGGTGCTGTTCAATGTTATGAAGGGCATGTGAATTCTCATACTCGTATACAAATTGGTGTTGATCCAGCTGAGAGATTTATTATGTCAGGTGGAGAGGATTGCAAGCTACGGTTATGGAGTATCAAGTCTGGTGAACTTCTCTTTGAGGACAAGTTCTCTGACTCAGTTCTCTCCACTGTGTGCTACCAAACATGTAGAAGTTTTAAAGCTGAAGAGGATGACCTATACAAGCATGACTCTTCTCTGGGTGCATGGCTTGGATCACATGAAGGACTGTTTTATATGCAGTGGTTATGA 1545 0.4233 MPQPRELPGFYYDPEKNRYFPIKGRIPGSSSKPKTPTLKPPQTPSNQLQESGRSCCRRLRNRTSKLLQARELDGRHVIASHYCKRNFAEEFRKIQASKPVVWKYRGTDKMGISALEHLRVDVQTPEGQSETDVLLTGSINGSLSFSEVGRVGKYFDGGTKWMADCVMNYVKEKTVERNEVLGPVFRPNRAALLMPSRISCIRLGPKCSSHAVNDGPIVGHALFTTLGSDTSGGSVYTLRLVEPLDLGSGILNTWSRLEEIASVRCTLWTAEYDYNRQRAVIGTNLGGASVDLETGMTSWFLHCKSDVFAQQIVNSGNVILCGLRNGAILTVDFREKRERLSDRLITHQIPCTSSDKKVGGSNKEWFKLKGDIYPSHTVRMPSSISCLVSLQFDEQYFFSSSMDGSMRLYDRRLLQRGAVQCYEGHVNSHTRIQIGVDPAERFIMSGGEDCKLRLWSIKSGELLFEDKFSDSVLSTVCYQTCRSFKAEEDDLYKHDSSLGAWLGSHEGLFYMQWL 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1378 514 PANTHER KATANIN P80 SUBUNIT 12 512 - -
Ssu1g1378 514 SMART WD40_4 371 410 IPR001680 GO:0005515
Ssu1g1378 514 SMART WD40_4 415 456 IPR001680 GO:0005515
Ssu1g1378 514 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 12 512 - -
Ssu1g1378 514 MobiDBLite consensus disorder prediction 1 53 - -
Ssu1g1378 514 Pfam WD domain, G-beta repeat 420 456 IPR001680 GO:0005515
Ssu1g1378 514 ProSiteProfiles Trp-Asp (WD) repeats profile. 422 465 IPR001680 GO:0005515
Ssu1g1378 514 MobiDBLite consensus disorder prediction 30 53 - -
Ssu1g1378 514 SUPERFAMILY WD40 repeat-like 291 477 IPR036322 GO:0005515
Ssu1g1378 514 Gene3D - 260 492 IPR015943 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1378 385 479 Miscellaneous Gene Families AT5G08390 28.866 4.28e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1378 K11799 - gmx:100798753 858.981