Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1372 ATGCGCTCTCGATCTCATCACGGATTCGCAGTTCCCCAAATTACCCTCTTCTGTTTACTCCTGCTGACCCCGCCACGCGCGTCGCTGGCTCTCAACCTCACCGCGCTCCTCTCCACCGCGCCGGACCTCTCCCAATTCGCCGCCCTCCTCGCCTCCGCCACGCCCCTCGCCGAGGATCTCTCCGACCGGTCCTCCCTCTCCCTCCTCGCCGTCCCCAACGCCTACCTCTCCGCCGACGACCACCTCGCCCGCCACCGCCTCTCCCCGGCCGCCCTCGCCGACGTCCTCCGCTACCACGTCCTCCTCCAGTTCCTCTCCTGGTCCGACCTCCGCGCCCTCCCGCCCACCGGGAAGCTCGTCACCACGCTCCTCCAAACCACCGGCCGCGCCACCGACAACTTCGGCTCCGTCAACATCACGCGCGACCCCCAATCCGGCGCCGTCTCGATCCGCTCCCCCGCCCCCTACTCCCCCTCCAACGCCACCGTCCTCTCCCTCGTCAAAACCCTACCCTACAACGTCACCATCTTCGCCGTCAATTCCCTCCTCATGCCCTACGGCCTCGACCTCATGGCCTCCGAAACCCGCCCCAACTTCGCCCTCAACATCACCAAAGCCCTCATCGACGGCCACAACTTCAACGTCGCCGCCTCCCTGCTCGCTGCCTCTGGCGTTGTCCAGGAATTTGAGGCCGACGAGGGCGGCGCTGGAATCACGCTCTTAGTTCCCGTCGACGACGCCTTTGCCGATCTCCCTCCCTCCGTCGCGCTCCAGTCTCTTCCCGCGGATAAGAAAGCGGTGGTTCTCAAATTCCACGTGCTGCATTCGTATTACCCTCTCGGTTCGCTTGAATCCGTTGTTAACCCCTTTCAACCTACCCTCGCCACCGAGGCCATGGGTGCTGGCAGCTTCACGCTCAACATTTCGCGCGTTAACGGCTCCGTCGCCATCAACACCGGCATCATTCAGGCCTCCATTACGCAGACCGTGTTTGATCAGAACCCCGTCGCGATCTTCGGGGTTTCCAAGGTTCTCTTGCCGAGGGAGATTTTTGGCAGGAATCCGATTGTGTCTGCCAAGCCTGTTGAGGGGGCTCCTCCGCCGGATGCTGACGCGCTCTCGCCGGAGAATTCGCCGGGACTTGATGGACAACCCTCGCACCTGTCGTCGCCGCCGGGGTTTCGCGAAGATGTGCGGTCTCGTGCTGGTGCCTCTGGTGGTTCCTGGTCGTTTGTTGTTCTTTGCTGTATAGGATTGTATCTTGTGGTATAG 1272 0.6281 MRSRSHHGFAVPQITLFCLLLLTPPRASLALNLTALLSTAPDLSQFAALLASATPLAEDLSDRSSLSLLAVPNAYLSADDHLARHRLSPAALADVLRYHVLLQFLSWSDLRALPPTGKLVTTLLQTTGRATDNFGSVNITRDPQSGAVSIRSPAPYSPSNATVLSLVKTLPYNVTIFAVNSLLMPYGLDLMASETRPNFALNITKALIDGHNFNVAASLLAASGVVQEFEADEGGAGITLLVPVDDAFADLPPSVALQSLPADKKAVVLKFHVLHSYYPLGSLESVVNPFQPTLATEAMGAGSFTLNISRVNGSVAINTGIIQASITQTVFDQNPVAIFGVSKVLLPREIFGRNPIVSAKPVEGAPPPDADALSPENSPGLDGQPSHLSSPPGFREDVRSRAGASGGSWSFVVLCCIGLYLVV 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1372 423 MobiDBLite consensus disorder prediction 361 399 - -
Ssu1g1372 423 ProSiteProfiles FAS1/BIgH3 domain profile. 200 345 IPR000782 -
Ssu1g1372 423 SUPERFAMILY FAS1 domain 30 186 IPR036378 -
Ssu1g1372 423 Pfam Fasciclin domain 212 347 IPR000782 -
Ssu1g1372 423 SUPERFAMILY FAS1 domain 207 347 IPR036378 -
Ssu1g1372 423 SMART fasc_3 239 348 IPR000782 -
Ssu1g1372 423 ProSiteProfiles FAS1/BIgH3 domain profile. 30 183 IPR000782 -
Ssu1g1372 423 Gene3D FAS1 domain 24 185 IPR036378 -
Ssu1g1372 423 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 4 16 421 - -
Ssu1g1372 423 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 16 421 IPR033254 -
Ssu1g1372 423 Gene3D FAS1 domain 200 348 IPR036378 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1372 Ssu-Chr1 30023533 30024920 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1372 - - ccaj:109812902 711.449