Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1370 ATGGCTGCAACCGGCAAAAAACACTACTTGAAACCAATTGAAGCAAGCATTGGAAGGAAAGCTGAAGCAGAcaaatttcttttccttgtgGCAATGATGGAAAATTCCAATGTGAGGTTGCACAAAGAAATGCATATTGACAAGAATAAGCATCTTCAATGGATGAACATGTCACTGCCAAGTAGCCAACATGCAGTGGAACTGGAACATGAAAAGAGGCATCAAggaagcttctccaaaagtgaAGCAATAGTCAAAGACAGTGGCAAGAGAATGGAGGATGAAGGATCCAAATGTGGTGCCCTTTGCATGTGTCTTCCAGGCTTTGGCTTTGGTAAAGCAAAGGCAGTAGAAGCAAGAAAAGGAGGCATCCAAATGGATCATTCAGTGAATCATGTAATGTCTAGCACATTTTCTTTGGAAAATTTTGAACTTAATTCTGGGGTTACACAAGGGAAAGGGATAATAATACAGGAAAATAATCATGAAGATGACTCCTTCAGCTCCTACTTTGACCTGCCTTCTATAATATTGAAATGCAGTGGCGAAGATGCATAA 558 0.3763 MAATGKKHYLKPIEASIGRKAEADKFLFLVAMMENSNVRLHKEMHIDKNKHLQWMNMSLPSSQHAVELEHEKRHQGSFSKSEAIVKDSGKRMEDEGSKCGALCMCLPGFGFGKAKAVEARKGGIQMDHSVNHVMSSTFSLENFELNSGVTQGKGIIIQENNHEDDSFSSYFDLPSIILKCSGEDA 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1370 185 PANTHER YCF3-INTERACTING PROTEIN 1, CHLOROPLASTIC 69 185 IPR040340 GO:0009535|GO:0048564|GO:0080183
Ssu1g1370 185 PANTHER - 42 71 - -
Ssu1g1370 185 PANTHER - 69 185 - -
Ssu1g1370 185 PANTHER YCF3-INTERACTING PROTEIN 1, CHLOROPLASTIC 42 71 IPR040340 GO:0009535|GO:0048564|GO:0080183
Ssu1g1370 185 MobiDBLite consensus disorder prediction 70 89 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1370 Ssu-Chr1 29978703 29980520 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1370 - - pvu:PHAVU_009G245000g 244.202