Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1368 ATGGCGGCCACATCGCAAGCCCCGCCATTGCATCATGAGTCTCTCGGTATGATCCCTCTCCAGAACGACACAAACGATATTGAATCCATTGATGAAGAAGGTAAGGAAGAATCCCATCCAAATCTCCCTTCATTCATGGACAACCAAGAACAGCATCACGAAGATCAAAAGTCCATCACTAACAAGAGGTACATGCCCCTTTTGGTTCTTAATTACCTATTGCTCTTTGTGGGTTCACTCTCCTCGAGTTTGCTCTCCAAGTACTATTTCATCCACAAAGGTTCAAGCAAATGGGTCTCAACTTGGGTCCAGTGTGCGGGCTTTCCCCTCTTGATCATCCCCATTTGCCTCCCACGTCTCCTTAAACACACCAAGAGGAAGCCCTTCGCTCAtttcaatccaaagatgttGTTGTATTCAGTTTTCGTTGGTATTATGTTAGGGTTCAATAATCTTATGATTTCATGGGGCGTGGCATATCTCCCGGTCTCAACCTCGGCACTTCTCTTATCCTCTCAGCTAGTCTTCACTCTCATGATGTCTGCCATTATcgtgaaacaaaaaataacctTTTCAAACCTCAACTGCGTCATCCTTATCACCTTAAGCTCCGTCATTCTAGCCTTGGATTCTGGTCACGAGAGACCAGAAGGGCTCCCCAAAAGGAACTACTTCACCGGATTCTTTTGCACCGTAGGTGCAGGTTTGTTGTTTGCCTTGTACTTGCCGGTGATGGAGAAGGTTTACAAGAGGGTGTACTGCTATGAAATGGTGATGGAAATGCAGTTCGTAATGGAGATTGCGGCAACGGTGTTGGCCACTGCAGGCATGGCATGGGGTGGAGGGTTTTCTGAGATGAAGGAAGAGGCTCGAAGGGTTTTTGATGAGGGATCCGCAGTGTACTGGGTAACGGTTATGGCAAGTGTGGTGACGTGGCAATGTTGCTTCATGGGAACTGCAGGGATGGTCTTTCTCACGTCTTCACTGACTGGGGGGATTTGCAGCACAGCCTTGCTGTCCGTGAATGTGTTGGGAGGGGTGGTGGTGTACAGAGATGCCTTTGGAGGTTTGAAGGCGGTGTCAACTGTTTTGTGCGTGTGGGGATTCTGCTCTTATGTCTATGGCATGTACATCAAAATGGTGCAAGAGAAGGCTCGAAGGAGCAACGGGAACAATGGATCAGGATCTTCCTCGGAGTTGATCCCTATCGGGAATCGTCCTGTGACTTGTTGA 1233 0.4704 MAATSQAPPLHHESLGMIPLQNDTNDIESIDEEGKEESHPNLPSFMDNQEQHHEDQKSITNKRYMPLLVLNYLLLFVGSLSSSLLSKYYFIHKGSSKWVSTWVQCAGFPLLIIPICLPRLLKHTKRKPFAHFNPKMLLYSVFVGIMLGFNNLMISWGVAYLPVSTSALLLSSQLVFTLMMSAIIVKQKITFSNLNCVILITLSSVILALDSGHERPEGLPKRNYFTGFFCTVGAGLLFALYLPVMEKVYKRVYCYEMVMEMQFVMEIAATVLATAGMAWGGGFSEMKEEARRVFDEGSAVYWVTVMASVVTWQCCFMGTAGMVFLTSSLTGGICSTALLSVNVLGGVVVYRDAFGGLKAVSTVLCVWGFCSYVYGMYIKMVQEKARRSNGNNGSGSSSELIPIGNRPVTC 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1368 410 MobiDBLite consensus disorder prediction 31 57 - -
Ssu1g1368 410 MobiDBLite consensus disorder prediction 389 404 - -
Ssu1g1368 410 SUPERFAMILY Multidrug resistance efflux transporter EmrE 127 214 - -
Ssu1g1368 410 Pfam Purine nucleobase transmembrane transport 67 380 - -
Ssu1g1368 410 PANTHER TRIOSE-PHOSPHATE TRANSPORTER FAMILY PROTEIN 1 393 - -
Ssu1g1368 410 MobiDBLite consensus disorder prediction 389 410 - -
Ssu1g1368 410 PANTHER OS09G0467300 PROTEIN-RELATED 1 393 IPR030182 GO:0015211|GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1368 Ssu-Chr1 29939106 29940338 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1368 46 375 Organic Solute Cotransporters AT1G30840 61.747 8.12e-139 400
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1368 - - gmx:100795076 558.525