Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1365 ATGTATCCAACATTTGGTGCTGCTGCTCCAAGTCCCAATGTCACAGAGGAGGATTTGAACCGTTTTAGGTTTTCTGTCAATGAAAATTTCGCCAAAGTTCAAAAGCTTGAGGAGCAAATTGCTGAAGTTGAAAAGTTCTACCGTTCCATTAATGTTCAAGTTAATAATGCCGAAGACAAAGGCCGGGAGAAACATCCTACTGGCACTAAAAGATCACAGCAAGGTGCATCAAGTAGGGAAGCTAATCCTTCAAACACAATGCAAGAGGTTATGCATCAGTTTTCCACAATATTGCATCAGATAATTCAGCATAAATGGGCTTGGCCCTTCATGGATCCTGTAGATGTTGAAGGTCTTGGGCTGCATGACTATTAtgagATCATTGAAAAGCCTATGGATTTCAGtacaataaaaaggaaaatggatGCTAAGGATGGTTCCGGTTATAAGAACGTGCGTGAGATATATTCTGATGTCAGGTTGATTTTTAAGAATGCAATGAAATACAACGATGAAAAACATGATATCCATGTTATGGCGAAGACATTGCTGGAAAAATTTGAGAAGAAATGGCTGCAGCTATTGCCTAAAGTTGCTCTGgcgGAAAGTGGACAATTAAAGGAAGAAGCACATGTGCAGTTGGAAACGCAGCTTGCTCAAGAAGCTACTTATGCCAATATGGCAAAGGATATAAGCCTTGCGCTGTGCGATGTTGAGATGAACCTAAAGAATCTCAAAGAAATGGTGATTGGAAAGTGCAGGAAACTATCAACTCGTGAGAAACTGGCACTTATGAGGTCTATCAACAGACTGACTCTTGAAAACCTCAACAAGGCATTGAAGATAGTTTCTGAGAATGACCCAACCTTCCGACCTTATGCTCAAGAGGTGAACCTTGACCTTGATGTTCAGAGCGACTACACAGTGTGGAGACTAAACGTTTATGTCAAAAAAGCACTGGAAGATCAGGAAAGAACTGCTGACGAGATACCTTTAATCACAACGATAACACTGAGGACAAGAAGAACACCACCAAAAGGAGGAAACTGTGATTCTTTTGCCAAAGACATTCGTGTAAAGAACTGA 1086 0.3987 MYPTFGAAAPSPNVTEEDLNRFRFSVNENFAKVQKLEEQIAEVEKFYRSINVQVNNAEDKGREKHPTGTKRSQQGASSREANPSNTMQEVMHQFSTILHQIIQHKWAWPFMDPVDVEGLGLHDYYEIIEKPMDFSTIKRKMDAKDGSGYKNVREIYSDVRLIFKNAMKYNDEKHDIHVMAKTLLEKFEKKWLQLLPKVALAESGQLKEEAHVQLETQLAQEATYANMAKDISLALCDVEMNLKNLKEMVIGKCRKLSTREKLALMRSINRLTLENLNKALKIVSENDPTFRPYAQEVNLDLDVQSDYTVWRLNVYVKKALEDQERTADEIPLITTITLRTRRTPPKGGNCDSFAKDIRVKN 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1365 361 Coils Coil 33 53 - -
Ssu1g1365 361 PRINTS Bromodomain signature 158 177 IPR001487 GO:0005515
Ssu1g1365 361 PRINTS Bromodomain signature 105 118 IPR001487 GO:0005515
Ssu1g1365 361 PRINTS Bromodomain signature 121 137 IPR001487 GO:0005515
Ssu1g1365 361 Pfam Bromodomain extra-terminal - transcription regulation 256 318 IPR027353 -
Ssu1g1365 361 Pfam Bromodomain 95 181 IPR001487 GO:0005515
Ssu1g1365 361 Gene3D - 47 213 IPR036427 GO:0005515
Ssu1g1365 361 ProSiteProfiles Bromodomain profile. 102 177 IPR001487 GO:0005515
Ssu1g1365 361 PANTHER OSJNBA0053K19.4 PROTEIN 8 325 - -
Ssu1g1365 361 PANTHER TRANSCRIPTION FACTOR GTE1-LIKE ISOFORM X1 8 325 IPR017413 GO:0005634|GO:0006355
Ssu1g1365 361 SMART bromo_6 83 196 IPR001487 GO:0005515
Ssu1g1365 361 Gene3D - 251 326 IPR038336 -
Ssu1g1365 361 ProSiteProfiles NET domain profile. 246 327 IPR027353 -
Ssu1g1365 361 SUPERFAMILY Bromodomain 72 198 IPR036427 GO:0005515
Ssu1g1365 361 MobiDBLite consensus disorder prediction 57 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1365 Ssu-Chr1 29894806 29900351 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1365 - - gmx:100795037 466.077