Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1361 ATGCCTCCCGTACCCATTTCCCCCATCAAAGTTGGGCACATTGATGATGTCCAAGAGCTAAGAAAAACTAAGCCAAGGACAATTCCTCAGAGATTTGTACGAGACATGACAGAAAGACCAACACTTACTATAGCTCTTCCCCCACCACAGAGTGACGTGCCTGTCATTGATTTCTCTAAGCTTAGCAAAGGGAACAAAGAGGAAGTCCTCAGTGAACTTTTCAATCTTGCAACTGCTTGTGAGGAGTGGGGATTTTTTCAgGTAATTAATCACGAGGTTGACCTCAATCTGCTAGAGAGCATAGAGAATCTGAGCAGGGAGTTCTTCATGCTACCTTTGGAAGAGAAACAGAAATACCCTATGGCTCCAGGTACAGTCCAAGGGTATGGACAAGCTTTTGTTTTCTCAGAGGACCAGAAGTTGGACTGGTGCAACATGTTTGCTCTTGGAATTGAACCTCGCTATGTTAGGAACCCAAATCTATGGCCAAAGAGGCCAGAAAGATTCAGTGAAACGGTGGAAGTGTACTCAGGAGAAATAAGGAAACTGTGCTATAATCTGTTAACATACATAGCTTTAGGCCTTGGTTTGAAAGAGGATGTGTTTGAGAAGATGTTTGGTGTGCCAGTGCAAGCCATAAGGATGAATTACTACCCCCCATGTTCCAGACCTGACCTTGTTTTGGGTCTGAGTCCCCATTCAGATGGAAGTGCCCTCACTGTGCTGCAACAAGCAAAGGGAGGCCCAGTGGGGCTTCAAATACTCAAGGACAATACATGGGTTCCTATTCAACCAATTCCAAATGCTCTTGTCATCAACATAGGAGACACAATAGAAGTTCTTACAAATGGAAAATACAGGAGTGTGGAGCATAGAGCTGTGGCTCATGAGGAGAAAGACAGACTCTCAATTGTGACATTTTTTGCTCCTAGCTATGAAGTAGAGCTTGGTCCAATGCCAGAATTTGTGGATGAAAACCACCCATGCATGTACAGAAGATACAACCATGGGGAGTACAGTAAACACTATGTAACAAACAAGTTACAAGGAAAAAAGACCCTGGACTTTGCCAAGATCCAAACCAAAAACACAAACTAG 1098 0.4372 MPPVPISPIKVGHIDDVQELRKTKPRTIPQRFVRDMTERPTLTIALPPPQSDVPVIDFSKLSKGNKEEVLSELFNLATACEEWGFFQVINHEVDLNLLESIENLSREFFMLPLEEKQKYPMAPGTVQGYGQAFVFSEDQKLDWCNMFALGIEPRYVRNPNLWPKRPERFSETVEVYSGEIRKLCYNLLTYIALGLGLKEDVFEKMFGVPVQAIRMNYYPPCSRPDLVLGLSPHSDGSALTVLQQAKGGPVGLQILKDNTWVPIQPIPNALVINIGDTIEVLTNGKYRSVEHRAVAHEEKDRLSIVTFFAPSYEVELGPMPEFVDENHPCMYRRYNHGEYSKHYVTNKLQGKKTLDFAKIQTKNTN 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1361 365 PANTHER OXOGLUTARATE/IRON-DEPENDENT DIOXYGENASE 10 362 - -
Ssu1g1361 365 PANTHER PROTEIN SRG1 10 362 - -
Ssu1g1361 365 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 209 310 IPR005123 -
Ssu1g1361 365 Pfam non-haem dioxygenase in morphine synthesis N-terminal 53 164 IPR026992 -
Ssu1g1361 365 Gene3D - 12 351 IPR027443 -
Ssu1g1361 365 SUPERFAMILY Clavaminate synthase-like 16 351 - -
Ssu1g1361 365 Pfam 2OG-Fe(II) oxygenase superfamily 211 309 IPR044861 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1361 Ssu-Chr1 29795390 29796847 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1361 52 359 Glycosyltransferase AT5G59530 35.759 4.10e-51 172
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1361 - - gmx:100785152 717.613
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g1361 1 29795390 29796847 Ssu1g1361 1 29795390 29796847 ECH