Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1342 ATGAGTCAGGAATCGTTTATATATAGCTTCGTGGCTCGTGGGACGATGGTGTTAGCTGAGTACACGGAGTTCACTGGAAACTTCCCTGCCATTGCAGCGCAGTGTCTCCAGAAGCTTCCCTCTTCCAACAACAAGTTCACCTACAGCTGTGACCACCACACCTTCAATTTCCTAGTTGAAGATGGTTATGCTTACTGTGTTGTTGCCAAGGAATCTGTTAGCAAGCAGATCTCTATTGCTTTCCTTGAACGTGTCAAAGCTGACTTTAAGAAAAGATATGGTGGTGGAAAAGCAGATACAGCTATTGCCAAGAGTCTGAACAAGGAGTTTGGACCAGTTATGAAAGAACACATGAAGTATATCATCGATCATGCTGAAGAGATTGTAAAGCTAATAAAAGTCAAGGCTCAAGTTTCAGAAGTTAAGAGTATCATGTTAGAAAATATAGACAAGGCTCTTGATAGAGGAGAAAATCTAACAATTCTTGCAGATAAGACGGAGACATTGCGTTCACAGGCTCAAGATTTCAGAAAGCAAGGAACACAAGTCCGTCGGAAGATGTGGTATCagaacatgaaaattaaattggttGTTCTGggaattttgttgtttttggtcTTGGTTATCTGGCTTTCTATTTGTGGTGGATTTGACTGTACAAACTAG 666 0.3904 MSQESFIYSFVARGTMVLAEYTEFTGNFPAIAAQCLQKLPSSNNKFTYSCDHHTFNFLVEDGYAYCVVAKESVSKQISIAFLERVKADFKKRYGGGKADTAIAKSLNKEFGPVMKEHMKYIIDHAEEIVKLIKVKAQVSEVKSIMLENIDKALDRGENLTILADKTETLRSQAQDFRKQGTQVRRKMWYQNMKIKLVVLGILLFLVLVIWLSICGGFDCTN 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1342 221 PANTHER VESICLE-ASSOCIATED MEMBRANE PROTEIN 724 1 220 - -
Ssu1g1342 221 SUPERFAMILY SNARE-like 6 121 IPR011012 -
Ssu1g1342 221 SUPERFAMILY SNARE fusion complex 129 192 - -
Ssu1g1342 221 PANTHER SNARE PROTEINS 1 220 - -
Ssu1g1342 221 Gene3D - 127 214 - -
Ssu1g1342 221 ProSiteProfiles Longin domain profile. 10 114 IPR010908 -
Ssu1g1342 221 Pfam Regulated-SNARE-like domain 32 110 IPR010908 -
Ssu1g1342 221 SMART Longin_2 31 113 IPR010908 -
Ssu1g1342 221 Pfam Synaptobrevin 130 215 IPR042855 -
Ssu1g1342 221 CDD Longin 7 120 IPR010908 -
Ssu1g1342 221 ProSiteProfiles v-SNARE coiled-coil homology domain profile. 130 190 IPR042855 -
Ssu1g1342 221 CDD R-SNARE 130 188 - -
Ssu1g1342 221 ProSitePatterns Synaptobrevin signature. 148 167 IPR001388 GO:0016021|GO:0016192
Ssu1g1342 221 PRINTS Synaptobrevin signature 135 154 IPR001388 GO:0016021|GO:0016192
Ssu1g1342 221 PRINTS Synaptobrevin signature 191 210 IPR001388 GO:0016021|GO:0016192
Ssu1g1342 221 PRINTS Synaptobrevin signature 155 174 IPR001388 GO:0016021|GO:0016192
Ssu1g1342 221 Gene3D Longin domain 1 126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1342 Ssu-Chr1 29453032 29455362 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1342 1 220 Miscellaneous Gene Families AT1G04760 69.091 6.16e-113 320
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1342 K08511 - gmx:100527252 417.927
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g1342 1 29453032 29455362 Ssu1g1342 1 29453032 29455362 ECH
Ssu6g0314 6 5034764 5036868 Ssu1g1342 1 29453032 29455362 PCT