Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1336 aTGGCTTCTCCACATGAAACAAAGAAAGCCCAAGCAAAGCGAGCGTTACGTTCCCTAGCAATAGGCATTGCGATTCCTTTCACCCTCACATTGACCATAATCATTCTCTTCGGTTCGGGGCGCAAGTACCATCGCATATCCAAGCCCTTTTGGGTCGCGCCACTATGGTTCATTCACTTGGCCACGTTGGGGTCATCTTTCTTCATGGGTCTCGCGGCCTGGCTAGTGTGGGCCGATGGTGGGTTCCAAGGGGAAACAGATGCAATGTCTCTCTACGTAGCTCATGTCTCTCTAAGCATCGTGTGGCACCCCCTCGTGCTTGTTATGAGTGCTTATTGGCTTGCTTTGCTTTCTGGCCTTGTGAATTTTGGGACCCTCTTTTTGTGTTACTTGAGGTTTAGAAAGGTGAACCCTTTTGCTAAAGATCTAGCCAAACCGTGCCTGGTATGGGCTGCGTATCTTTGTCTTATTAGCTTCAAGCTAATGCTTCTTTGA 495 0.4869 MASPHETKKAQAKRALRSLAIGIAIPFTLTLTIIILFGSGRKYHRISKPFWVAPLWFIHLATLGSSFFMGLAAWLVWADGGFQGETDAMSLYVAHVSLSIVWHPLVLVMSAYWLALLSGLVNFGTLFLCYLRFRKVNPFAKDLAKPCLVWAAYLCLISFKLMLL 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1336 164 PANTHER PERIPHERAL-TYPE BENZODIAZEPINE RECEPTOR 4 163 IPR004307 GO:0016021
Ssu1g1336 164 CDD TSPO_MBR 19 153 IPR004307 GO:0016021
Ssu1g1336 164 Pfam TspO/MBR family 37 162 IPR004307 GO:0016021
Ssu1g1336 164 Gene3D TspO/MBR protein 13 164 IPR038330 -
Ssu1g1336 164 PIRSF PBR 8 164 IPR004307 GO:0016021
Ssu1g1336 164 PANTHER TSPO/MBR FAMILY PROTEIN 4 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1336 Ssu-Chr1 29361629 29362123 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1336 K05770 - gmx:100790873 290.041
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g1336 1 29361629 29362123 Ssu1g1336 1 29361629 29362123 ECH