Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1326 ATGCGGGTCACCGTTTCCTCCATTTCCATTCTGATCACCGTCTCCTCCACGCTCCACACACGCTCCTctattgaaatttcaaattcccGCTCAAAAGAACTCGGTACAGTTGGGTGGACACTGGAAACCCTGGACTATATAAAGGAGTTGTGCACAGATTTTCGACCCTCTTCGCTCTCGCGTCGCTCCGTACCTCTTACACCGCCCGAACTTTGTTATTCGGAGCGATCCGAGAGAAAGTCTGCAAACATGTTACTTTACCAGGACCTCATTTCGGGTGATGAGCTTCTCTCTGACTCCTTCCGCTACAAAGAAATTGAGAATGGAATGTTGTGGGAAGTTGAGGGGAAGTGGGTTGTTAAAGGAGCAGTTGATGTAGACATTGGAGCAAACCCTTCTGCTGAAGGCGGTGAAGATGAGGGTGTTGATGACCAGGCTGTTAAGGTTGTTGACATTGTTGACACATTCAGACTTCAGGAGCAACCCGCTTTTGATAAGAAGCAGTTTATTACCTTCATGAAGAGGTTTATCAAGAATTTGACACCCAAACTTGACGAGGAGAAACAGGAGTTGTTTAAAAAGAACATCGAGGGAGCAACCAAATACTTGCTCTCTAAGATTAAGGATTTTCAATTCTTTGTTGGGGAGAGCATGCATGATGATGGTTGCTTGGTCTTTGCCTACTACAAGGATGGTGCTACTGATCCAACATTCCTGTACTTTGCATATGCCCTAAAGGAAGTTAAGTGCTAA 753 0.4449 MRVTVSSISILITVSSTLHTRSSIEISNSRSKELGTVGWTLETLDYIKELCTDFRPSSLSRRSVPLTPPELCYSERSERKSANMLLYQDLISGDELLSDSFRYKEIENGMLWEVEGKWVVKGAVDVDIGANPSAEGGEDEGVDDQAVKVVDIVDTFRLQEQPAFDKKQFITFMKRFIKNLTPKLDEEKQELFKKNIEGATKYLLSKIKDFQFFVGESMHDDGCLVFAYYKDGATDPTFLYFAYALKEVKC 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1326 250 PRINTS Translationally controlled tumour protein signature 142 161 IPR018105 -
Ssu1g1326 250 PRINTS Translationally controlled tumour protein signature 129 140 IPR018105 -
Ssu1g1326 250 PRINTS Translationally controlled tumour protein signature 84 104 IPR018105 -
Ssu1g1326 250 Pfam Translationally controlled tumour protein 84 246 IPR018105 -
Ssu1g1326 250 ProSiteProfiles Translationally controlled tumor protein (TCTP) domain profile. 84 250 IPR034737 -
Ssu1g1326 250 PANTHER TRANSLATIONALLY-CONTROLLED TUMOR PROTEIN HOMOLOG 84 250 - -
Ssu1g1326 250 SUPERFAMILY Mss4-like 84 250 IPR011057 -
Ssu1g1326 250 Gene3D Metal Binding Protein, Guanine Nucleotide Exchange Factor; Chain A 84 250 IPR011323 -
Ssu1g1326 250 ProSitePatterns Translationally controlled tumor protein (TCTP) domain signature 1. 128 138 IPR018103 -
Ssu1g1326 250 ProSitePatterns Translationally controlled tumor protein (TCTP) domain signature 2. 207 229 IPR018103 -
Ssu1g1326 250 PANTHER TRANSLATIONALLY CONTROLLED TUMOR PROTEIN-RELATED 84 250 IPR018105 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1326 Ssu-Chr1 29219127 29223144 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1326 - - gmx:100499679 322.398