Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1319 ATGGAGGTGGAACCCGTGGAACCACAGTCGCTGAAGAAGCTAAGCTTCAAGTCTCTGAAGCGTGCTCTTGATCTCTTCTCTCCCATTCACGGACACCTTGCTCCTCCCGATGCCGAAagCAAGAGAATACGCATCAACCACAAGGTGAGCGTGGAGTATGGTGGAATCAAAAGCACCGCCAATCAACCTCCTCGTCAAGTTAGTTCTGCCACACAGGATTGCACTCAACAAGCGGGGCCCTCTAATACCCTTGCTCTTCCAGGTCCTGGAGATTCCAAGGATCACCAGAAAGGAGGACCACAAAATGCCTTGGTTGTTGGTCCAGCTATGCCATCCACAACTCCGAATGATACTGGCTTTCAGAGCAAAAATACGGCAATTGTTTCTGCTTCTGGTTCATCTGAAAGAAATTTATCAACATCTGCTTTGATGGAAAGAATGCCAAGCAAATGGCCACGTCCTATATggcatgcaccaaggaagaactaCAGGGTCATCAGCGGTCACTTAGGATGGGTGAGATCTATTGCAGTTGATCCCAGTAACACATGGTTTTGTACTGGTTCTGCAGATCGAACTATCAAGATATGGGACTTGGCAAGTGGAGTATTAAAGCTCACATTAACAGGCCACATTGAACAAATAAGAGGCCTTGCTGTTAGCAACAAACATACTTACATGTTCTCTGCTGGTGATGATAAGCAAGTTAAATGTTGGGATCTTGAACAGAATAAGGTTATTAGGTCTTATCATGGGCATCTGAGTGGTGTTTATTGCTTGGCTCTTCATCCCACAATTGACATTTTACTAACTGGAGGACGTGATTCTGTCTGCCGGGTTTGGGATATACGTAGTAAAATGCAAATTCATGCTCTTTCAGGTCATGATAACACTGTCTGCTCTGTGTTTACTCGGCCGACGGATCCCCAAGTTGTTACGGGTTCTCATGACACTACCATCAAGATGTGGGACCTTAGATATGGTAAAACAATGTTAACCCTTACAAATCACAAAAAATCTGTTCGAGCAATGGCTCCACATCCCAAAGAGCAATCTTTTGCATCTGCATCAGCTGACAATATTAAAAAGTTCAACCTGCCAAAAGGAGAATTTTTGCACAATATGCTCTCTCAACAAAAGACTATCATCAATGCAATGGCTGTCAATGAGGAGGGTGTGATGGTTACTGGAGGTGACAATGGCAGTATGTGGTTCTGGGATTGGAAGAGTGGTCACAATTTCCAGCAAGCCCAAACAATTGTACAGCCTGGGTCATTGGACAGTGAAGCTGGTATTTATGCTTTAACCTATGATGTTACTGGTTCAAGGCTTATAACCTGCGAAGCTGACAAGACTATAAAAATGTGGAAAGAAGATGAGGCTGCCACTCCAGAAACCCATCCCCTTAACTTCAGGCCTCCTAAAGACATTCGTCGATTCTAG 1443 0.4373 MEVEPVEPQSLKKLSFKSLKRALDLFSPIHGHLAPPDAESKRIRINHKVSVEYGGIKSTANQPPRQVSSATQDCTQQAGPSNTLALPGPGDSKDHQKGGPQNALVVGPAMPSTTPNDTGFQSKNTAIVSASGSSERNLSTSALMERMPSKWPRPIWHAPRKNYRVISGHLGWVRSIAVDPSNTWFCTGSADRTIKIWDLASGVLKLTLTGHIEQIRGLAVSNKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLALHPTIDILLTGGRDSVCRVWDIRSKMQIHALSGHDNTVCSVFTRPTDPQVVTGSHDTTIKMWDLRYGKTMLTLTNHKKSVRAMAPHPKEQSFASASADNIKKFNLPKGEFLHNMLSQQKTIINAMAVNEEGVMVTGGDNGSMWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALTYDVTGSRLITCEADKTIKMWKEDEAATPETHPLNFRPPKDIRRF 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1319 480 PRINTS G protein beta WD-40 repeat signature 185 199 IPR020472 -
Ssu1g1319 480 PRINTS G protein beta WD-40 repeat signature 269 283 IPR020472 -
Ssu1g1319 480 PRINTS G protein beta WD-40 repeat signature 311 325 IPR020472 -
Ssu1g1319 480 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 250 285 - -
Ssu1g1319 480 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 166 202 - -
Ssu1g1319 480 PANTHER WD40 REPEAT PROTEINPRL1/PRL2-RELATED 5 480 IPR045241 GO:0000398
Ssu1g1319 480 ProSiteProfiles Trp-Asp (WD) repeats profile. 250 291 IPR001680 GO:0005515
Ssu1g1319 480 MobiDBLite consensus disorder prediction 56 122 - -
Ssu1g1319 480 SMART WD40_4 419 457 IPR001680 GO:0005515
Ssu1g1319 480 SMART WD40_4 159 198 IPR001680 GO:0005515
Ssu1g1319 480 SMART WD40_4 327 365 IPR001680 GO:0005515
Ssu1g1319 480 SMART WD40_4 201 240 IPR001680 GO:0005515
Ssu1g1319 480 SMART WD40_4 285 324 IPR001680 GO:0005515
Ssu1g1319 480 SMART WD40_4 368 407 IPR001680 GO:0005515
Ssu1g1319 480 SMART WD40_4 243 282 IPR001680 GO:0005515
Ssu1g1319 480 SUPERFAMILY WD40 repeat-like 155 457 IPR036322 GO:0005515
Ssu1g1319 480 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 208 245 - -
Ssu1g1319 480 Gene3D - 145 480 IPR015943 GO:0005515
Ssu1g1319 480 MobiDBLite consensus disorder prediction 56 83 - -
Ssu1g1319 480 Pfam WD domain, G-beta repeat 161 198 IPR001680 GO:0005515
Ssu1g1319 480 Pfam WD domain, G-beta repeat 245 282 IPR001680 GO:0005515
Ssu1g1319 480 Pfam WD domain, G-beta repeat 206 240 IPR001680 GO:0005515
Ssu1g1319 480 Pfam WD domain, G-beta repeat 289 324 IPR001680 GO:0005515
Ssu1g1319 480 ProSitePatterns Trp-Asp (WD) repeats signature. 269 283 IPR019775 -
Ssu1g1319 480 ProSiteProfiles Trp-Asp (WD) repeats profile. 292 333 IPR001680 GO:0005515
Ssu1g1319 480 ProSiteProfiles Trp-Asp (WD) repeats profile. 166 207 IPR001680 GO:0005515
Ssu1g1319 480 PANTHER BNAA01G27690D PROTEIN 5 480 - -
Ssu1g1319 480 ProSiteProfiles Trp-Asp (WD) repeats profile. 208 249 IPR001680 GO:0005515
Ssu1g1319 480 CDD WD40 162 457 - -
Ssu1g1319 480 MobiDBLite consensus disorder prediction 107 122 - -
Ssu1g1319 480 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 292 326 - -
Ssu1g1319 480 ProSitePatterns Trp-Asp (WD) repeats signature. 311 325 IPR019775 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1319 208 456 Miscellaneous Gene Families AT5G08390 23.108 2.16e-19 89.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1319 K12862 - gmx:100775526 931.398
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g1319 1 29142839 29149072 Ssu1g1319 1 29142839 29149072 ECH