Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1317 ATGGAACCTCACAGCCTGTGTTCCTCATTGGAAATATTGGCACAACATAACAACACTATCACTGAGCTTATCATCTCATCTTATCACTGTTTTGCGGTACTTTTGGTTGCATGTCTAGCAACCCTCTACTTTGCATGCAGAAGGAAAGCACCCATTTATTTGATAGACTTCACCTGCTACTGTCCACCCAGTTCTTACAGGCTACCACTGGCCATGTTTGAAGAGAATCAACTTTTTGATAACATGGATCCAGAGGCTGTTGCTTTCCAGTGCAAGATCATGGAAAAATCTGGATTCAGTGAGCAAACTTCCATTTCTCCATCTCTTGCTCAGATACCCAAAATAAAGGCTCTCTCCTTTGCCCTTGAGGAGGCTGAGACAATAATGTGTTCAGTAATCACAGACCTGTTTGAGAAAAACAACATCAACCCAAAAGCCATTGACATACTCATCACTAATAGTAGTGTCTTCTGCCCCACCCCATCTCTCAGTGCCATGGTGGTTAACAAGTTCAGAATGAGGAGCAACATCATGAGCTTCAACCTATCAGGTATGGGATGTAGTGCTGGAATCATATCAATGAGTCTAGCAAAAGACTTGTTGAGAGTTAACAGGAACTCACTGGCTTTAATAGTAAGCACTGAGACCCTAAGTCTAAACTGGTACACTGGTAAAGTCCCTTCTATGCTGCTATCTAATTGCCTATTCAGAATGGGTGGAGCAGCTATATTGATGTCTAGCAGGGTCCAAGATAAGCACAAGGCAAAGTATAAGCTGCAGCATATTGTTAGAACAATCACTGCACAGGATGATCAATCTCATGGCTGTGTCTACCAAGAAGTGGATCCAGAGAACAAAGAAGGTATATCCATATCAAAGAACATAGTCAATGTGTCTGGAGATGCGCTGAAGAAAATATAG 921 0.4213 MEPHSLCSSLEILAQHNNTITELIISSYHCFAVLLVACLATLYFACRRKAPIYLIDFTCYCPPSSYRLPLAMFEENQLFDNMDPEAVAFQCKIMEKSGFSEQTSISPSLAQIPKIKALSFALEEAETIMCSVITDLFEKNNINPKAIDILITNSSVFCPTPSLSAMVVNKFRMRSNIMSFNLSGMGCSAGIISMSLAKDLLRVNRNSLALIVSTETLSLNWYTGKVPSMLLSNCLFRMGGAAILMSSRVQDKHKAKYKLQHIVRTITAQDDQSHGCVYQEVDPENKEGISISKNIVNVSGDALKKI 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1317 306 PANTHER 3-KETOACYL-COA SYNTHASE 21-RELATED 18 305 - -
Ssu1g1317 306 Pfam FAE1/Type III polyketide synthase-like protein 46 305 IPR013601 GO:0006633|GO:0016020|GO:0016747
Ssu1g1317 306 Gene3D - 47 253 IPR016039 GO:0016746
Ssu1g1317 306 PANTHER 3-KETOACYL-COA SYNTHASE 18 305 IPR012392 GO:0006633|GO:0016020|GO:0016747
Ssu1g1317 306 SUPERFAMILY Thiolase-like 40 248 IPR016039 GO:0016746
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1317 Ssu-Chr1 29139065 29139985 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1317 25 304 Acyl Lipid Metabolism Gene Families AT5G49070 52.669 1.68e-97 288
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1317 K15397 - gmx:100783404 565.459