Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1315 ATGATGAGGTCACGACATGGAGCTAACAAGTTTGGTTGTTTTGGTAAATCATGGACCAACGTTTATCGTTCCTTCCATTCCCTCTCATCTCCGTTTCACTATTCATTCCCAGCTACAGATCCCACTGTACTCCACCGAGTTCTCGAACGCTGTAGAGTCTCTATGGATTTCAGAACCGCCTCTAAAACCCACGCAAGAGTTGTTGTACTTGGCTTTGCCACTTACCCTTCTCTTGTGGCGTCTCTCATATCGACCTACGCTCATTTTCACCAACCCCACATTGCCCTTCACGTTTTCTCCAACGTTTTGGACCTCTTCAACATGAATTTGGTGATTGAAAGTTTAATGAAAGGTGGGCAATGTGATGTTGCCAAGAAGGTGTTTGGCAAAATGCCTGTTAGAGATGTGGTCACGTGGAACTCCATGATCGGTGGTTATGTCAAAAACTCACGCTTCTTTGATGCGTTGAGCCTTTTCCGAAGGATGCTGAGTGCCAAGGTTGAGCCTGATGGGTTCACCTTTGCTTCTGTGGTTACTGCGTGTGCACGCCTTGGGGCTCTTTGCAGTGCCAAGTGGGTGCACGGTTTGATGGTTGAGAAAAGGGTTGAACTGAATTATATATTGAGTGCTGCATTGATTGACATGTATGCTAAGTGTGGTAGGATTGATGTTTCGAGACAGGTTTTTGAGGAGGTTGCGCGTGATCATGTGTCTGTTTGGAATGCTATGATTAGTGGGTTGGCAATTTACGGGCTTGCGATGGATGTGACTGTGGTGTTTTCAAGGATGGAGATGGAGCGTGTTTTGCCAGATTCTGTTACTTTTATTGGGATTCTGACTGCTTGTAGCCACTGTGGATTGGTTGAAAAAGGTCGCAAGTATTTTGGTATGATGCAGAACCGTTTCATGATTCAGCCTCAACTCGAGCATTATGGAACCATGGTTGATCTCTTGGGACGAGCAGGGCTCATGGAAGAGGCCTATGGTGTGATTAAGGTGATGCCTATGGAGCCTGATGTTGTTATCTGGAGAGCACTTTTGAGTGCTTGTAGAATCTACAGAAGGAAAGAACTTGGTGAAGTTGCCATTGCAAATATATCCCGCCTAGAGAGTGGAGACTTTGTGTTGTTGTCAAATATGTATTGCTCTTTAAAGAATTGGGATAGTGCTGAGAGAGTGAGACAGATGATGAAAATGGGAGGGGTTCGGAAAAACCAGTGGTAA 1224 0.4526 MMRSRHGANKFGCFGKSWTNVYRSFHSLSSPFHYSFPATDPTVLHRVLERCRVSMDFRTASKTHARVVVLGFATYPSLVASLISTYAHFHQPHIALHVFSNVLDLFNMNLVIESLMKGGQCDVAKKVFGKMPVRDVVTWNSMIGGYVKNSRFFDALSLFRRMLSAKVEPDGFTFASVVTACARLGALCSAKWVHGLMVEKRVELNYILSAALIDMYAKCGRIDVSRQVFEEVARDHVSVWNAMISGLAIYGLAMDVTVVFSRMEMERVLPDSVTFIGILTACSHCGLVEKGRKYFGMMQNRFMIQPQLEHYGTMVDLLGRAGLMEEAYGVIKVMPMEPDVVIWRALLSACRIYRRKELGEVAIANISRLESGDFVLLSNMYCSLKNWDSAERVRQMMKMGGVRKNQW 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1315 407 TIGRFAM PPR: pentatricopeptide repeat domain 137 170 IPR002885 -
Ssu1g1315 407 Pfam E motif 353 404 IPR046848 -
Ssu1g1315 407 Pfam PPR repeat 239 266 IPR002885 -
Ssu1g1315 407 Pfam PPR repeat 273 300 IPR002885 -
Ssu1g1315 407 Pfam PPR repeat 310 335 IPR002885 -
Ssu1g1315 407 Pfam PPR repeat 211 234 IPR002885 -
Ssu1g1315 407 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 35 405 - -
Ssu1g1315 407 PANTHER OS07G0578800 PROTEIN-RELATED 35 405 IPR045215 GO:0003723|GO:0009451
Ssu1g1315 407 Gene3D Tetratricopeptide repeat domain 39 236 IPR011990 GO:0005515
Ssu1g1315 407 Gene3D Tetratricopeptide repeat domain 237 407 IPR011990 GO:0005515
Ssu1g1315 407 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 135 169 IPR002885 -
Ssu1g1315 407 Pfam PPR repeat family 134 183 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1315 Ssu-Chr1 29134401 29135741 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1315 109 398 Glycoside Hydrolase AT3G49170 35.154 8.42e-61 209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1315 - - gmx:100788229 724.546