Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1310 ATGAAGAACAGATCTACCGAAGATTTCTCGAGCCTTCCATACATTTGCACATTGCTTAATTGCTCCCTGTGGACTTACTATGGAATCACAAAGCCTGGAGAATACCTCGTGGTAACTGTTAATGGCTTTGGCATCCTGGTGGAGACAATCtacattattctttttcttatatacGCACCAAAAGTGATCAGGGCTAAGACTGCCATTCTGGCTATGATTTTGGATGTGGGAGTCTTGGCTGCAGCAACTGTTACTACTCAATTAGCATTGCAAGGAGAGGCTCGTAGTGGTGCTGTTGGTATTATGGGAGCAGGCTTGAACATTGTTATGTATTCCTCACCTCTTGCTGTCATGAAAACAGTGGTGACGACAAAGAGCGTGGCATATATGCCATTCCTCCTTtcgtttttcttcttcttaaacGGTGGCGTTTGGTTGTTGTACGCTGTTCTTGTTCGTGATGTTATCCTCGGGCCAATTGATGAGTCACGTCAGAAGGAAGATGGGGCCATCTAG 516 0.4244 MKNRSTEDFSSLPYICTLLNCSLWTYYGITKPGEYLVVTVNGFGILVETIYIILFLIYAPKVIRAKTAILAMILDVGVLAAATVTTQLALQGEARSGAVGIMGAGLNIVMYSSPLAVMKTVVTTKSVAYMPFLLSFFFFLNGGVWLLYAVLVRDVILGPIDESRQKEDGAI 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1310 171 Gene3D - 97 160 - -
Ssu1g1310 171 Gene3D - 1 61 - -
Ssu1g1310 171 PANTHER RAG1-ACTIVATING PROTEIN 1 1 158 - -
Ssu1g1310 171 Pfam Sugar efflux transporter for intercellular exchange 99 157 IPR004316 GO:0016021
Ssu1g1310 171 Pfam Sugar efflux transporter for intercellular exchange 2 61 IPR004316 GO:0016021
Ssu1g1310 171 PANTHER BIDIRECTIONAL SUGAR TRANSPORTER SWEET17 1 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1310 Ssu-Chr1 29024578 29029359 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1310 1 157 Miscellaneous Gene Families AT4G15920 62.025 1.08e-64 196
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1310 K15382 - gmx:100808537 241.506